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NC_041866.1__YP_009593407.1__FDG83_gp78__00078

Bact-Vir

NC_041866.1__YP_009593407.1__FDG83_gp78__00078

Identity

Accession:
NC_041866 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vieuvirus› Acinetobacter_phage_YMC11/11/R3177

TaxID: 1628721

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-124
PDB
Domain cluster: rep: CAKLQF020000016.1__CAH1088172.1__SAMEA5780031_02853__00075__D35-128
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13987.13 best YedD 121.5 2.30e-35 100.0% 90.7%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.85 69.0 7.17e-01 84.5% 95.5%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.82 66.0 6.38e-01 85.6% 98.2%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.79 74.0 6.85e-01 100.0% 85.5%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.77 60.0 5.74e-01 82.5% 100.0%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.76 62.0 6.01e-01 87.6% 98.1%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.74 58.0 6.04e-01 82.5% 100.0%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.73 58.0 5.96e-01 84.5% 98.9%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.73 57.0 5.69e-01 83.5% 93.0%
2m4lA00 2.40.128.360 Mainly Beta › Beta Barrel › Lipocalin › 0.72 58.0 5.81e-01 85.6% 92.9%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.69 54.0 5.20e-01 83.5% 99.1%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.68 50.0 5.39e-01 78.4% 98.8%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 52.0 4.68e-01 81.4% 100.0%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 54.0 4.89e-01 88.7% 99.3%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 53.0 4.87e-01 93.8% 100.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.62 49.0 5.11e-01 84.5% 96.6%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 38.0 4.63e-01 72.2% 96.8%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.60 49.0 3.60e-01 86.6% 99.6%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.60 48.0 3.76e-01 85.6% 81.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.59 37.0 4.28e-01 84.5% 91.0%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.59 44.0 4.55e-01 79.4% 98.9%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 50.0 4.55e-01 96.9% 96.4%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 42.0 3.25e-01 77.3% 71.0%
2l9pA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 43.0 3.71e-01 82.5% 78.7%
1iucA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.57 48.0 3.42e-01 94.8% 95.8%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 4.12e-01 94.8% 98.5%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.54 43.0 3.54e-01 86.6% 76.1%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.54 39.0 3.49e-01 77.3% 86.6%
2vifA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 44.0 4.05e-01 90.7% 100.0%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 41.0 4.14e-01 83.5% 100.0%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 39.0 3.90e-01 77.3% 90.0%
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 42.0 4.01e-01 85.6% 96.5%
2eobA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 42.0 4.00e-01 88.7% 92.0%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 44.0 3.92e-01 95.9% 80.7%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 39.0 3.98e-01 83.5% 100.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 31.0 3.50e-01 86.6% 83.8%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 39.0 3.27e-01 82.5% 94.8%
2izvA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 41.0 3.52e-01 88.7% 68.1%
2gq1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 38.0 3.28e-01 82.5% 95.9%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.57e-01 99.0% 59.1%
1k8kC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 39.0 2.72e-01 84.5% 79.9%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1402067 9.1.1.6 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › NlpE 0.79 64.0 6.55e-01 84.5% 95.7%
3334482 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.78 62.0 5.03e-01 84.5% 93.1%
3303119 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.77 63.0 5.57e-01 85.6% 97.8%
3453774 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.77 62.0 5.11e-01 85.6% 76.3%
3342595 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.77 62.0 5.04e-01 85.6% 75.1%
3674091 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.75 62.0 4.84e-01 88.7% 70.4%
3371113 9.23.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 0.75 60.0 4.88e-01 86.6% 68.3%
3802536 9.23.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein BT_0869 › Hypothetical protein BT_0869 › PAP_fibrillin 0.73 62.0 5.13e-01 90.7% 70.3%
1833882 9.4.1.3 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct 0.73 57.0 5.85e-01 83.5% 100.0%
868783 9.16.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein Atu4866 › Hypothetical protein Atu4866 › DUF5640 0.72 58.0 5.81e-01 85.6% 92.9%
3432014 9.1.1.34 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.72 61.0 5.09e-01 90.7% 71.3%
858 9.3.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Qn_am_d_aII 0.72 58.0 5.44e-01 86.6% 88.2%
857 9.3.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Qn_am_d_aII 0.72 58.0 5.62e-01 85.6% 98.1%
4380184 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.72 54.0 5.61e-01 78.4% 100.0%
3664762 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.71 63.0 5.18e-01 96.9% 79.4%
4668044 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.71 56.0 5.05e-01 83.5% 100.0%
3990703 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.71 63.0 5.29e-01 97.9% 92.1%
3486885 9.8.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.71 56.0 5.40e-01 84.5% 94.5%
3449040 9.1.1.34 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PAP_fibrillin 0.71 65.0 5.26e-01 100.0% 74.9%
3470263 9.8.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain 0.70 55.0 5.32e-01 83.5% 94.5%
2756455 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.68 51.0 5.35e-01 80.4% 95.5%
3939467 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.68 47.0 4.42e-01 90.7% 59.3%
4157284 9.7.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › Inh 0.66 53.0 5.22e-01 86.6% 100.0%
141833 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.66 50.0 5.28e-01 80.4% 96.5%
3279724 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.66 52.0 4.77e-01 86.6% 96.9%
4927832 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.64 49.0 4.73e-01 80.4% 93.6%
3474609 3794.1.1.1 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.64 51.0 4.32e-01 87.6% 86.5%
3604518 3111.1.1.0 ↗ beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.64 44.0 4.43e-01 72.2% 84.0%
3952469 3794.1.1.2 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.62 49.0 4.54e-01 87.6% 93.1%
3264341 5.1.4.147 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RMC1_N 0.62 41.0 2.81e-01 76.3% 20.0%
3943357 274.1.1.35 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 0.61 39.0 4.14e-01 97.9% 72.9%
4003998 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.60 49.0 4.47e-01 88.7% 91.5%
3387574 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.60 47.0 3.38e-01 85.6% 90.6%
4199183 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 52.0 4.54e-01 94.8% 99.3%
3387861 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.59 44.0 4.19e-01 78.4% 93.9%
3278402 71.2.1.1 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind 0.59 46.0 3.76e-01 84.5% 100.0%
852 9.1.1.29 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › BFA1_C 0.59 50.0 4.55e-01 96.9% 96.4%
3710725 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 41.0 2.67e-01 72.2% 30.8%
3480535 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 42.0 4.18e-01 80.4% 70.5%
3979195 274.1.1.35 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 0.58 41.0 3.80e-01 97.9% 57.6%
3515736 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 47.0 3.45e-01 90.7% 33.3%
3523579 883.1.1.10 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_C2CD2L 0.57 45.0 3.53e-01 86.6% 83.8%
3230195 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.28e-01 92.8% 94.2%
3894207 3369.1.1.1 ↗ beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.56 42.0 3.65e-01 80.4% 90.3%
3745132 9.8.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.56 49.0 4.47e-01 97.9% 86.2%
3719326 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.26e-01 97.9% 91.3%
3614586 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.55 40.0 3.79e-01 76.3% 95.8%
3725228 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 47.0 3.26e-01 94.8% 97.5%
3814058 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.54 40.0 3.69e-01 78.4% 88.5%
3716204 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.54 40.0 3.77e-01 76.3% 87.8%
3937758 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 42.0 4.04e-01 83.5% 87.6%
3398830 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 39.0 3.35e-01 78.4% 71.2%
3002312 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 41.0 3.99e-01 83.5% 97.3%
3754155 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 39.0 2.66e-01 79.4% 30.1%
4022544 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 39.0 2.61e-01 78.4% 46.4%
4002401 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.53 39.0 3.89e-01 79.4% 91.4%
3768377 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.53 43.0 4.06e-01 89.7% 90.8%
5027663 244.2.1.11 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › DUF2283 0.52 28.0 3.34e-01 84.5% 76.9%
3625308 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.52 42.0 3.90e-01 87.6% 89.6%
5054509 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.52 38.0 3.12e-01 77.3% 56.4%
3928299 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 41.0 3.45e-01 86.6% 64.1%
3617996 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 41.0 3.96e-01 86.6% 93.6%
4626423 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.51 44.0 3.06e-01 94.8% 93.1%
1545880 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.51 31.0 3.33e-01 86.6% 71.2%
3627122 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.40e-01 81.4% 94.0%
3547494 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 35.0 3.34e-01 72.2% 90.0%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.71e-01 87.6% 68.3%
3518621 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 40.0 3.77e-01 89.7% 84.0%