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NC_041872.1__YP_009594072.1__FDG89_gp16__00016
Bact-VirNC_041872.1__YP_009594072.1__FDG89_gp16__00016
Identity
- Accession:
- NC_041872 ↗
- Kingdom:
- phage
Quality
83.1
mean pLDDT
Taxonomy
TaxID: 1740108
Cluster
View cluster (60 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-54_166-234
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f6tA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 43.0 | 4.02e-01 | 86.8% | 58.1% |
| 2no4A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 34.0 | 4.04e-01 | 90.1% | 89.3% |
| 2pw4A00 | 1.10.3300.10 | Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain | 0.53 | 36.0 | 3.13e-01 | 72.7% | 45.9% |
| 4iw7A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 36.0 | 3.68e-01 | 86.8% | 76.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3726757 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.59 | 35.0 | 2.57e-01 | 100.0% | 21.9% |
| 3597807 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 36.0 | 3.54e-01 | 87.6% | 59.2% |
| 4964137 | 304.3.1.11 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MNHE | 0.55 | 35.0 | 3.61e-01 | 95.0% | 66.1% |
| 4989311 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.54 | 38.0 | 3.56e-01 | 100.0% | 56.8% |
| 4936590 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.54 | 39.0 | 3.61e-01 | 100.0% | 58.7% |
| 3981752 | 829.1.1.1 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB | 0.53 | 38.0 | 3.72e-01 | 87.6% | 68.5% |
| 4552747 | 304.113.1.1 ↗ | a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 | 0.53 | 37.0 | 3.87e-01 | 87.6% | 77.4% |
| 4930935 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 42.0 | 4.30e-01 | 86.8% | 88.3% |
| 4967994 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.52 | 35.0 | 3.96e-01 | 99.2% | 92.2% |
| 3963382 | 2498.1.1.17 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YgjP-like | 0.52 | 36.0 | 3.34e-01 | 100.0% | 56.0% |
D2
high
residues 72-165
Domain cluster:
rep: SRR1747059_scaffold_20_prodigal-single.1__X__X__00013__D2-78
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pjyA00 | 2.60.120.1140 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 | 0.63 | 45.0 | 4.07e-01 | 74.5% | 95.3% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.60 | 50.0 | 5.06e-01 | 92.6% | 97.9% |
| 1ypzF01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 49.0 | 4.55e-01 | 93.6% | 81.3% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 52.0 | 4.39e-01 | 100.0% | 67.3% |
| 7mxdX01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 49.0 | 4.59e-01 | 94.7% | 83.2% |
| 3jciA00 | 2.60.120.950 | Mainly Beta › Sandwich › Jelly Rolls › Circovirus capsid protein | 0.57 | 50.0 | 4.07e-01 | 100.0% | 92.1% |
| 4o2tA00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.57 | 48.0 | 4.03e-01 | 94.7% | 75.0% |
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.57 | 42.0 | 3.31e-01 | 78.7% | 91.4% |
| 3tp4B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 4.40e-01 | 94.7% | 83.9% |
| 2cuhA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 4.26e-01 | 97.9% | 83.0% |
| 6xaxA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 4.27e-01 | 92.6% | 84.7% |
| 4j3vA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.75e-01 | 92.6% | 63.8% |
| 2q7nA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 4.52e-01 | 98.9% | 84.7% |
| 4lplA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 48.0 | 4.25e-01 | 97.9% | 97.2% |
| 3b4nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 4.28e-01 | 98.9% | 85.2% |
| 2jpeA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.55 | 39.0 | 3.54e-01 | 75.5% | 82.6% |
| 7y8sA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 44.0 | 4.39e-01 | 92.6% | 85.3% |
| 4h87A00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 37.0 | 3.47e-01 | 72.3% | 87.9% |
| 5edxA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.29e-01 | 93.6% | 86.0% |
| 5whzH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 4.10e-01 | 91.5% | 78.0% |
| 2e8yA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 36.0 | 3.66e-01 | 93.6% | 69.5% |
| 2h41A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 37.0 | 3.75e-01 | 90.4% | 71.6% |
| 7jooC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 44.0 | 4.45e-01 | 90.4% | 88.7% |
| 1y7eA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.53 | 46.0 | 4.32e-01 | 97.9% | 99.2% |
| 3psqB00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.53 | 40.0 | 3.30e-01 | 80.9% | 86.3% |
| 4ksnA00 | 6.20.250.80 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.53 | 35.0 | 4.05e-01 | 80.9% | 100.0% |
| 4i9xA00 | 2.60.40.3790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 45.0 | 3.67e-01 | 96.8% | 58.3% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 41.0 | 4.17e-01 | 92.6% | 84.9% |
| 5fmvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 4.00e-01 | 93.6% | 85.7% |
| 4nx9A02 | 2.60.40.4390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 41.0 | 3.88e-01 | 89.4% | 79.3% |
| 2fsuA00 | 3.40.50.11310 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Bacterial phosphonate metabolism protein PhnH | 0.51 | 40.0 | 3.40e-01 | 86.2% | 96.5% |
| 3cu7A05 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.51 | 43.0 | 4.17e-01 | 98.9% | 83.0% |
| 6brbD00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 38.0 | 3.93e-01 | 93.6% | 86.2% |
| 1kt0A02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.51 | 41.0 | 3.92e-01 | 90.4% | 91.2% |
| 4p04A01 | 2.60.40.3100 | Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain | 0.51 | 39.0 | 3.76e-01 | 95.7% | 73.6% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4977728 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 44.0 | 4.62e-01 | 89.4% | 72.9% |
| 5061361 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 42.0 | 4.54e-01 | 89.4% | 76.2% |
| 3486455 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 56.0 | 4.91e-01 | 95.7% | 82.9% |
| 408734 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.63 | 45.0 | 4.06e-01 | 74.5% | 94.6% |
| 4962633 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.61 | 43.0 | 3.88e-01 | 73.4% | 98.5% |
| 3605029 | 3127.1.1.0 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related | 0.60 | 42.0 | 3.12e-01 | 74.5% | 73.9% |
| 5023972 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 45.0 | 4.76e-01 | 100.0% | 91.8% |
| 3528265 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.58 | 42.0 | 4.40e-01 | 93.6% | 83.5% |
| 5051459 | 327.3.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C | 0.58 | 47.0 | 3.96e-01 | 90.4% | 98.2% |
| 3284828 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.57 | 46.0 | 3.89e-01 | 88.3% | 75.0% |
| 4268177 | 11.1.1.47 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 | 0.57 | 39.0 | 3.72e-01 | 92.6% | 60.9% |
| 4268481 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.56 | 45.0 | 3.60e-01 | 86.2% | 61.6% |
| 4028543 | 929.1.1.0 ↗ | beta duplicates or obligate multimers › Resistin › Resistin › Resistin | 0.56 | 41.0 | 4.42e-01 | 100.0% | 96.0% |
| 5064765 | 3127.1.1.1 ↗ | beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 | 0.56 | 40.0 | 3.61e-01 | 74.5% | 96.2% |
| 3996024 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.55 | 38.0 | 3.34e-01 | 73.4% | 78.7% |
| 3974016 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.54 | 40.0 | 3.51e-01 | 76.6% | 99.3% |
| 4032563 | 10.29.1.2 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins › Siphovirus-type_tail_C | 0.54 | 48.0 | 4.29e-01 | 100.0% | 97.8% |
| 4048404 | 323.1.1.5 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation | 0.54 | 44.0 | 3.22e-01 | 89.4% | 82.3% |
| 3201304 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.54 | 43.0 | 3.39e-01 | 89.4% | 74.9% |
| 4935495 | 7578.1.1.1 ↗ | a/b three-layered sandwiches › PhnH-like › PhnH-like › PhnH-like › PhnH | 0.54 | 43.0 | 3.47e-01 | 89.4% | 96.9% |
| 4097408 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 43.0 | 4.31e-01 | 98.9% | 86.3% |
| 4084909 | 7578.1.1.1 ↗ | a/b three-layered sandwiches › PhnH-like › PhnH-like › PhnH-like › PhnH | 0.53 | 42.0 | 3.43e-01 | 88.3% | 95.3% |
| 4017602 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.53 | 37.0 | 3.36e-01 | 72.3% | 100.0% |
| 5064714 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 45.0 | 4.04e-01 | 95.7% | 72.6% |
| 4964729 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 32.0 | 3.43e-01 | 86.2% | 71.2% |
| 3619410 | 10.40.1.1 ↗ | beta sandwiches › jelly-roll › PHR domain › PHR domain › PHR | 0.51 | 43.0 | 3.57e-01 | 100.0% | 50.9% |
| 1542 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 38.0 | 3.77e-01 | 100.0% | 75.5% |
| 4017308 | 10.32.1.232 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF4360 | 0.50 | 44.0 | 3.66e-01 | 100.0% | 79.4% |