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NC_041872.1__YP_009594089.1__FDG89_gp33__00033

Bact-Vir

NC_041872.1__YP_009594089.1__FDG89_gp33__00033

Identity

Accession:
NC_041872 ↗
Kingdom:
phage

Quality

52.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 223-364
PDB
D2 high residues 1535-1595
PDB
D3 medium residues 444-639
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hfsA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.71 29.0 3.36e-01 90.8% 50.0%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 24.0 3.79e-01 86.2% 96.0%
2cxaA01 3.30.70.3550 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Leucyl/phenylalanyl-tRNA-protein transferase, N-terminal domain 0.59 16.0 2.88e-01 96.9% 71.7%
6q3wB02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.55 30.0 3.24e-01 90.8% 62.0%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 25.0 3.50e-01 86.7% 91.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3992501 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.60 26.0 3.60e-01 85.7% 82.2%
4946854 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.58 38.0 4.53e-01 95.9% 99.2%
4001244 109.4.1.1955 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_2nd 0.57 25.0 2.71e-01 73.0% 45.5%
2791538 3281.1.1.2 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N 0.51 39.0 2.82e-01 78.6% 89.2%
3614296 5076.1.1.1 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.50 39.0 3.37e-01 81.6% 71.3%
D4 medium residues 726-824
PDB
D5 medium residues 923-985
PDB
D6 medium residues 1072-1187
PDB
D7 medium residues 1189-1211_1250-1392
PDB