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NC_041872.1__YP_009594092.1__FDG89_gp36__00036

Bact-Vir

NC_041872.1__YP_009594092.1__FDG89_gp36__00036

Identity

Accession:
NC_041872 ↗
Kingdom:
phage

Quality

92.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fipvunavirus› Flavobacterium_phage_FpV4

TaxID: 1740108

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-103
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.69 57.0 5.71e-01 100.0% 96.6%
6ocxA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.65 44.0 3.18e-01 70.9% 49.1%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.64 54.0 4.88e-01 100.0% 72.8%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.59 49.0 3.94e-01 100.0% 66.9%
4rv5A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 47.0 3.34e-01 100.0% 71.8%
4kwaB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 46.0 3.31e-01 96.4% 33.9%
1af7A01 1.10.155.10 Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.57 47.0 4.27e-01 100.0% 85.0%
2lcqA01 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.57 43.0 3.50e-01 89.1% 54.5%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 42.0 3.54e-01 85.5% 52.4%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 46.0 3.57e-01 98.2% 86.9%
2etdA00 1.20.1440.20 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain 0.56 43.0 3.21e-01 85.5% 55.3%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 40.0 3.77e-01 100.0% 61.1%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.53 43.0 3.78e-01 96.4% 92.3%
4d3zA02 1.10.132.130 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.53 41.0 3.31e-01 94.5% 42.7%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.53 42.0 3.84e-01 100.0% 65.1%
2v1yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 3.88e-01 100.0% 69.7%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 34.0 3.43e-01 100.0% 63.8%
3kdgA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.52 45.0 3.84e-01 100.0% 63.8%
4c0kA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.52 40.0 3.50e-01 94.5% 63.4%
2mh3A00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.52 34.0 3.16e-01 100.0% 52.9%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.51 43.0 4.10e-01 94.5% 83.3%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.51 41.0 3.16e-01 98.2% 40.4%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4328684 2484.1.1.18 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.70 59.0 3.53e-01 100.0% 13.9%
3966804 148.1.3.238 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 0.66 56.0 5.50e-01 100.0% 91.7%
3228852 103.11.1.1 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N 0.66 55.0 5.27e-01 100.0% 95.4%
3948672 639.2.1.1 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.63 38.0 3.89e-01 100.0% 61.8%
4420813 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.62 47.0 4.68e-01 98.2% 80.0%
3870903 103.1.1.53 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th 0.62 49.0 4.82e-01 100.0% 85.0%
3255275 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 40.0 3.97e-01 92.7% 63.3%
3584608 3660.1.1.3 ↗ alpha bundles › Protein-export membrane protein secG › Protein-export membrane protein secG › Protein-export membrane protein secG › OPA1_C 0.60 40.0 3.26e-01 70.9% 38.3%
3329713 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.60 47.0 4.60e-01 100.0% 80.0%
4933807 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 43.0 3.85e-01 83.6% 65.9%
5082325 3705.1.1.3 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.58 39.0 3.69e-01 74.5% 55.7%
4009705 639.2.1.0 ↗ alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.53 41.0 4.02e-01 100.0% 76.7%