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NC_041872.1__YP_009594100.1__FDG89_gp44__00044
Bact-VirNC_041872.1__YP_009594100.1__FDG89_gp44__00044
Identity
- Accession:
- NC_041872 ↗
- Kingdom:
- phage
Quality
85.0
mean pLDDT
Taxonomy
TaxID: 1740108
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-90
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pbiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 51.0 | 4.52e-01 | 90.3% | 79.8% |
| 1bm8A00 | 3.10.260.10 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain | 0.61 | 47.0 | 4.27e-01 | 84.7% | 90.9% |
| 4n04A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.60 | 38.0 | 3.31e-01 | 100.0% | 42.3% |
| 3a1cA02 | 3.40.1110.10 | Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N | 0.57 | 49.0 | 4.28e-01 | 100.0% | 94.9% |
| 3r4qA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.54 | 36.0 | 3.01e-01 | 100.0% | 37.9% |
| 3iv6A02 | 1.10.150.330 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › zn-dependent alcohol dehydrogenase | 0.53 | 41.0 | 4.27e-01 | 95.8% | 98.5% |
| 4n0rA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 41.0 | 2.79e-01 | 88.9% | 27.1% |
| 3buxB02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.52 | 39.0 | 3.71e-01 | 95.8% | 67.4% |
| 2kpqA01 | 6.10.250.730 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 38.0 | 3.77e-01 | 100.0% | 78.4% |
| 2nwuB01 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.50 | 40.0 | 3.42e-01 | 90.3% | 88.1% |
| 2a5yC03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 39.0 | 3.46e-01 | 86.1% | 72.1% |
| 1y1uA03 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.50 | 40.0 | 3.44e-01 | 90.3% | 64.8% |
| 1v8wA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 42.0 | 3.35e-01 | 94.4% | 80.5% |
| 1r8gA00 | 3.30.590.20 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.50 | 40.0 | 2.69e-01 | 94.4% | 51.4% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3838306 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.61 | 43.0 | 3.46e-01 | 73.6% | 95.9% |
| 3781394 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 51.0 | 4.33e-01 | 91.7% | 82.6% |
| 3203041 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.60 | 49.0 | 4.48e-01 | 93.1% | 88.0% |
| 1125531 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.60 | 38.0 | 4.20e-01 | 100.0% | 81.0% |
| 3595010 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 4.21e-01 | 90.3% | 90.0% |
| 1905827 | 101.1.2.174 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_56 | 0.57 | 47.0 | 4.59e-01 | 91.7% | 98.7% |
| 3173396 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 47.0 | 4.09e-01 | 90.3% | 81.8% |
| 3855855 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.56 | 46.0 | 4.03e-01 | 91.7% | 74.5% |
| 3458999 | 101.1.2.73 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82 | 0.55 | 45.0 | 4.16e-01 | 90.3% | 73.7% |
| 3668847 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.55 | 45.0 | 3.96e-01 | 90.3% | 71.8% |
| 3837566 | 101.1.2.12 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEP | 0.55 | 45.0 | 3.97e-01 | 90.3% | 73.3% |
| 3994523 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.55 | 41.0 | 4.14e-01 | 80.6% | 91.4% |
| 1160871 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.54 | 36.0 | 3.83e-01 | 100.0% | 76.9% |
| 3853513 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.54 | 43.0 | 2.97e-01 | 90.3% | 65.0% |
| 3687068 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.54 | 44.0 | 3.23e-01 | 97.2% | 58.3% |
| 3610225 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 43.0 | 3.00e-01 | 90.3% | 83.8% |
| 3742869 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 3.83e-01 | 91.7% | 86.7% |
| 3697306 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.52 | 35.0 | 2.57e-01 | 70.8% | 68.1% |
| 3257174 | 101.1.2.148 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC5_C | 0.51 | 40.0 | 3.44e-01 | 90.3% | 84.6% |
| 3555783 | 101.1.2.374 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD | 0.51 | 40.0 | 3.68e-01 | 91.7% | 65.6% |