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NC_041872.1__YP_009594112.1__FDG89_gp56__00056

Bact-Vir

NC_041872.1__YP_009594112.1__FDG89_gp56__00056

Identity

Accession:
NC_041872 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fipvunavirus› Flavobacterium_phage_FpV4

TaxID: 1740108

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-144
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.60 30.0 3.73e-01 100.0% 77.0%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.57 37.0 3.76e-01 91.7% 65.5%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 35.0 3.43e-01 73.6% 56.9%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 27.0 2.99e-01 100.0% 56.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994776 218.1.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.59 32.0 3.60e-01 70.2% 67.4%
3497046 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 31.0 3.22e-01 71.9% 51.3%
3670792 243.3.1.67 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C 0.58 25.0 3.23e-01 86.0% 70.8%
3435849 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 26.0 2.98e-01 90.1% 54.5%
3268888 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.53 28.0 3.15e-01 70.2% 65.6%
3593482 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.51 32.0 3.48e-01 99.2% 76.0%
3617645 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 44.0 2.58e-01 94.2% 80.0%
3572060 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.51 39.0 3.94e-01 99.2% 82.5%
3483370 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 26.0 3.17e-01 91.7% 76.2%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.50 24.0 2.99e-01 70.2% 76.9%
D2 medium residues 182-239
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4tkcA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.65 45.0 3.54e-01 72.4% 53.4%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.64 42.0 4.01e-01 91.4% 55.6%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 45.0 2.84e-01 75.9% 37.6%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 46.0 2.97e-01 82.8% 25.0%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 41.0 2.78e-01 75.9% 18.0%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 44.0 2.82e-01 81.0% 27.8%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 42.0 3.95e-01 79.3% 91.9%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 39.0 3.07e-01 72.4% 51.1%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.59e-01 84.5% 88.9%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.55 43.0 3.41e-01 87.9% 58.9%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 38.0 2.37e-01 75.9% 63.2%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 35.0 3.18e-01 70.7% 48.8%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 43.0 3.99e-01 94.8% 89.3%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.51 37.0 3.14e-01 82.8% 45.9%
1h6vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 35.0 2.45e-01 77.6% 47.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033729 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.74 45.0 3.86e-01 100.0% 40.4%
3660003 5.1.10.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › ANAPC4_WD40 0.68 47.0 4.23e-01 72.4% 87.5%
3261831 5.3.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.65 44.0 3.45e-01 72.4% 52.3%
4304229 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.64 48.0 2.92e-01 82.8% 29.1%
4025955 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.64 47.0 2.84e-01 81.0% 26.3%
3512778 375.1.1.9 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-C4_Topoisom 0.62 43.0 3.72e-01 74.1% 77.9%
4288670 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.61 42.0 2.64e-01 72.4% 71.2%
4928594 221.1.2.20 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › Ribosomal_S4e 0.61 47.0 3.36e-01 82.8% 46.7%
4956008 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.61 45.0 2.82e-01 81.0% 21.7%
3193273 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 2.62e-01 81.0% 13.1%
3272437 5.1.4.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.60 44.0 2.63e-01 81.0% 20.0%
3790336 5.1.3.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_Rol-3 0.59 44.0 3.02e-01 82.8% 35.3%
3606266 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 44.0 2.59e-01 81.0% 38.4%
3907533 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.58 35.0 3.96e-01 93.1% 85.0%
3543794 6.1.1.1 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.57 40.0 2.92e-01 74.1% 41.2%
3994804 2003.1.2.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.56 40.0 2.67e-01 79.3% 46.3%
3797728 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 36.0 3.27e-01 70.7% 45.9%
4013030 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.55 43.0 2.80e-01 91.4% 69.3%
3291190 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 37.0 2.51e-01 74.1% 44.2%
3432242 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.54 44.0 3.52e-01 89.7% 52.2%
3657897 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.54 40.0 4.03e-01 81.0% 98.3%
3250440 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 45.0 3.48e-01 98.3% 94.8%
3357079 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.53 41.0 3.32e-01 87.9% 49.2%
4322502 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 45.0 2.71e-01 100.0% 91.7%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 38.0 3.27e-01 81.0% 68.9%
3533115 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.52 44.0 3.29e-01 100.0% 84.4%
3935555 4161.1.1.0 ↗ beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like 0.52 38.0 2.53e-01 81.0% 72.1%
3821213 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.51 44.0 3.51e-01 100.0% 68.8%
4886914 4998.1.1.1 ↗ beta sandwiches › Flagellar hook protein flgE D2 domain-like › Flagellar hook protein flgE D2 domain › Flagellar hook protein flgE D2 domain › FlgE_D2 0.51 36.0 2.79e-01 77.6% 31.5%