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NC_041877.1__YP_009594503.1__FDG94_gp092__00092

Bact-Vir

NC_041877.1__YP_009594503.1__FDG94_gp092__00092

Identity

Accession:
NC_041877 ↗
Kingdom:
phage

Quality

61.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Samunavirus› Pseudomonas_phage_SM1

TaxID: 1772332

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-68
PDB
D2 medium residues 69-150
PDB
Domain cluster: rep: OQ622094.1__WGH28324.1__13AC503A_gene0015__00014__D49-128
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 59.0 6.54e-01 96.3% 98.5%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 56.0 6.34e-01 92.7% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 56.0 6.24e-01 93.9% 100.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 56.0 6.21e-01 93.9% 100.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 54.0 5.97e-01 97.6% 96.9%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 56.0 6.02e-01 97.6% 97.1%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 46.0 5.34e-01 86.6% 100.0%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 50.0 5.29e-01 90.2% 88.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 5.42e-01 95.1% 93.3%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 48.0 4.96e-01 97.6% 90.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 48.0 5.09e-01 95.1% 100.0%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.58 45.0 4.71e-01 91.5% 93.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 3.99e-01 95.1% 62.0%
3exzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 45.0 3.80e-01 87.8% 98.6%
1s3iA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.54 41.0 3.83e-01 81.7% 97.1%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 46.0 4.46e-01 97.6% 95.6%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 42.0 3.94e-01 90.2% 75.5%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 45.0 3.60e-01 100.0% 57.9%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 43.0 4.32e-01 100.0% 93.0%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 40.0 3.67e-01 89.0% 98.2%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.80 61.0 6.76e-01 96.3% 100.0%
3306779 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.80 60.0 6.71e-01 96.3% 100.0%
4524363 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.79 60.0 6.70e-01 96.3% 100.0%
4038269 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.79 59.0 6.59e-01 96.3% 100.0%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 59.0 6.54e-01 96.3% 98.5%
4028885 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 59.0 6.52e-01 96.3% 100.0%
4158157 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 59.0 6.56e-01 96.3% 100.0%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 59.0 6.60e-01 93.9% 100.0%
4041586 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 59.0 6.51e-01 96.3% 100.0%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.78 59.0 6.53e-01 96.3% 100.0%
4419948 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 58.0 6.38e-01 95.1% 98.5%
4101580 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 58.0 6.45e-01 96.3% 100.0%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 57.0 6.32e-01 95.1% 98.5%
4292289 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 57.0 6.32e-01 95.1% 98.5%
4284764 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 58.0 6.38e-01 96.3% 100.0%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 58.0 6.40e-01 96.3% 100.0%
4073200 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 58.0 6.39e-01 95.1% 100.0%
4037383 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.77 58.0 6.41e-01 96.3% 100.0%
4051625 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 57.0 6.29e-01 95.1% 98.5%
4086925 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 57.0 6.29e-01 96.3% 98.5%
3599172 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 58.0 6.38e-01 96.3% 100.0%
4146937 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 57.0 6.27e-01 95.1% 98.5%
2138090 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 57.0 6.31e-01 96.3% 100.0%
4077367 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 57.0 6.40e-01 93.9% 100.0%
4646632 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 56.0 6.25e-01 95.1% 98.5%
4201878 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.76 57.0 6.30e-01 96.3% 100.0%
3950208 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 57.0 6.29e-01 96.3% 100.0%
3590827 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 57.0 6.27e-01 96.3% 100.0%
4446791 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 55.0 6.09e-01 93.9% 96.9%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.74 58.0 6.18e-01 98.8% 97.1%
4931072 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.74 57.0 6.06e-01 97.6% 95.7%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.74 56.0 5.66e-01 96.3% 82.5%
3483489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.82e-01 97.6% 89.3%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 46.0 5.44e-01 91.5% 96.4%
4863266 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.72 52.0 5.67e-01 97.6% 95.4%
4010317 4.1.1.395 ↗ beta barrels › SH3 › SH3 › SH3 › PF27398 0.70 50.0 5.53e-01 100.0% 93.8%
4045576 4.1.1.161 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4178 0.67 50.0 5.54e-01 93.9% 100.0%
4972485 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 5.16e-01 90.2% 100.0%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 46.0 5.05e-01 91.5% 89.2%
591 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.65 52.0 5.41e-01 96.3% 93.4%
3720660 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 5.27e-01 96.3% 94.7%
5079843 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 46.0 5.04e-01 90.2% 96.9%
3886492 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.63 47.0 4.92e-01 90.2% 86.7%
3497683 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.63 55.0 4.52e-01 97.6% 56.0%
3627576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 5.14e-01 86.6% 100.0%
3347795 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.61 48.0 4.93e-01 95.1% 87.5%
3437213 3174.1.1.1 ↗ beta barrels › Ribosomal protein L14-like › Ribosomal protein L14-related › Ribosomal protein L14-related › Ribosomal_L14 0.61 49.0 4.29e-01 86.6% 67.5%
3821751 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.61 48.0 4.88e-01 97.6% 87.5%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.61 44.0 4.62e-01 97.6% 84.0%
4030398 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 45.0 4.96e-01 86.6% 100.0%
3267804 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.94e-01 96.3% 95.0%
4068131 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.60 43.0 4.14e-01 96.3% 65.3%
3485387 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 5.02e-01 90.2% 97.3%
2883309 4.27.1.1 ↗ beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 › MRP-S34 0.59 51.0 3.80e-01 97.6% 39.4%
4026785 4.1.1.279 ↗ beta barrels › SH3 › SH3 › SH3 › IQ 0.59 46.0 4.22e-01 85.4% 67.3%
3783617 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.58 48.0 4.86e-01 90.2% 98.8%
3264469 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.58 50.0 4.96e-01 95.1% 96.5%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.58 49.0 4.58e-01 97.6% 76.0%
3951961 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.57 45.0 4.33e-01 97.6% 74.7%
3938484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.35e-01 97.6% 70.8%
3981045 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 49.0 4.02e-01 100.0% 63.5%
4628460 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 46.0 4.31e-01 92.7% 74.3%
4963049 4.1.1.486 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7098 0.55 46.0 4.67e-01 91.5% 92.5%
3818309 4.1.1.25 ↗ beta barrels › SH3 › SH3 › SH3 › PAZ 0.55 48.0 4.15e-01 97.6% 100.0%
3729690 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.55 45.0 4.36e-01 92.7% 93.7%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.50e-01 91.5% 92.9%
4283649 270.1.1.2 ↗ beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.54 46.0 4.08e-01 93.9% 96.6%
4050042 4.1.1.441 ↗ beta barrels › SH3 › SH3 › SH3 › PF26332 0.54 45.0 4.56e-01 92.7% 96.2%
5059010 4261.1.1.0 ↗ a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.53 33.0 3.80e-01 100.0% 90.9%
140 1.1.7.34 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D4 0.52 46.0 4.46e-01 97.6% 95.6%
4077893 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 43.0 2.66e-01 98.8% 89.8%