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NC_041878.1__YP_009594552.1__FDG95_gp012__00012
Bact-VirNC_041878.1__YP_009594552.1__FDG95_gp012__00012
Identity
- Accession:
- NC_041878 ↗
- Kingdom:
- phage
Quality
88.7
mean pLDDT
Taxonomy
TaxID: 2772511
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-40
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f2bA05 | 6.10.50.10 | Special › Helix non-globular › Insulin-like, subunit E › | 0.78 | 63.0 | 5.92e-01 | 100.0% | 72.9% |
| 1a3qA01 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.73 | 61.0 | 3.95e-01 | 100.0% | 22.3% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.70 | 47.0 | 3.96e-01 | 81.1% | 42.6% |
| 6qdjA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 53.0 | 4.19e-01 | 100.0% | 40.8% |
| 1icrA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.69 | 56.0 | 3.55e-01 | 97.3% | 16.2% |
| 3mgdB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.67 | 48.0 | 3.33e-01 | 100.0% | 20.4% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.67 | 48.0 | 4.66e-01 | 94.6% | 70.7% |
| 3jsjC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.66 | 48.0 | 3.09e-01 | 81.1% | 16.4% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 56.0 | 4.82e-01 | 97.3% | 65.0% |
| 3ufeA02 | 1.20.58.1950 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 51.0 | 4.76e-01 | 100.0% | 75.5% |
| 1vzsA01 | 1.10.246.110 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Mitochondrial ATP synthase-coupling factor 6 | 0.64 | 49.0 | 4.38e-01 | 100.0% | 57.1% |
| 3sllA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.63 | 45.0 | 3.91e-01 | 83.8% | 47.5% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 49.0 | 3.64e-01 | 100.0% | 30.8% |
| 2qdfA03 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 51.0 | 4.12e-01 | 100.0% | 50.6% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.60 | 47.0 | 2.99e-01 | 97.3% | 16.3% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.60 | 50.0 | 3.21e-01 | 94.6% | 20.0% |
| 7z8iC01 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.59 | 44.0 | 3.75e-01 | 100.0% | 45.7% |
| 2r18A02 | 1.10.8.880 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 | 0.59 | 46.0 | 4.15e-01 | 100.0% | 61.0% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.56 | 48.0 | 3.22e-01 | 97.3% | 77.2% |
| 4edgA01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.55 | 42.0 | 3.08e-01 | 100.0% | 83.6% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3651198 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 64.0 | 5.60e-01 | 100.0% | 60.0% |
| 3375611 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 61.0 | 5.57e-01 | 100.0% | 66.0% |
| 3420476 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 60.0 | 4.79e-01 | 100.0% | 44.0% |
| 3380244 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.75 | 62.0 | 4.99e-01 | 100.0% | 46.3% |
| 5058742 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.67 | 55.0 | 3.09e-01 | 100.0% | 6.9% |
| 3340637 | 4004.1.1.5 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc | 0.67 | 48.0 | 3.08e-01 | 100.0% | 14.2% |
| 3482354 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.66 | 52.0 | 3.42e-01 | 100.0% | 20.9% |
| 3545793 | 4004.1.1.5 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc | 0.66 | 54.0 | 3.38e-01 | 97.3% | 17.2% |
| 3719495 | 4004.1.1.5 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc | 0.65 | 53.0 | 3.40e-01 | 97.3% | 18.5% |
| 3718979 | 4004.1.1.5 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › DAGK_acc | 0.63 | 52.0 | 3.22e-01 | 100.0% | 15.3% |
| 3743336 | 101.1.2.401 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_GTF3C1_N | 0.62 | 51.0 | 3.79e-01 | 100.0% | 36.4% |
| 3413935 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.61 | 51.0 | 3.86e-01 | 94.6% | 40.0% |
| 4170809 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.61 | 51.0 | 3.85e-01 | 94.6% | 40.0% |
| 3070344 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.61 | 46.0 | 2.79e-01 | 100.0% | 12.5% |
| 3600890 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.61 | 49.0 | 3.17e-01 | 97.3% | 19.5% |
| 4945476 | 4004.1.1.1 ↗ | beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › YegS_C | 0.58 | 43.0 | 2.84e-01 | 94.6% | 17.1% |
| 5080189 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 46.0 | 3.38e-01 | 100.0% | 33.6% |
| 5080113 | 244.4.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › PF27537 | 0.54 | 44.0 | 3.67e-01 | 100.0% | 74.7% |