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NC_041878.1__YP_009594580.1__FDG95_gp040__00040

Bact-Vir

NC_041878.1__YP_009594580.1__FDG95_gp040__00040

Identity

Accession:
NC_041878 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Pectobacterium_phage_vB_PcaM_CBB

TaxID: 2772511

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-107
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 48.0 5.86e-01 78.0% 94.2%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 48.0 6.07e-01 78.0% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 46.0 5.15e-01 76.8% 76.2%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 46.0 5.75e-01 80.5% 98.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 47.0 5.00e-01 80.5% 70.4%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.77 44.0 5.28e-01 79.3% 87.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 45.0 5.40e-01 78.0% 87.5%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 49.0 5.22e-01 86.6% 74.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 43.0 5.43e-01 76.8% 95.8%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 46.0 5.26e-01 78.0% 84.7%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.75 44.0 5.31e-01 78.0% 92.3%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 5.08e-01 82.9% 94.0%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.71 41.0 4.96e-01 81.7% 94.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 46.0 5.09e-01 100.0% 84.4%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 45.0 5.29e-01 95.1% 100.0%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 38.0 4.73e-01 72.0% 95.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 40.0 4.52e-01 81.7% 80.0%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.67 45.0 4.96e-01 82.9% 86.6%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 43.0 3.62e-01 82.9% 39.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 41.0 4.95e-01 75.6% 100.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.67e-01 81.7% 72.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 48.0 4.92e-01 95.1% 81.0%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.50e-01 92.7% 72.8%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 45.0 5.16e-01 81.7% 100.0%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.96e-01 80.5% 88.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 40.0 4.51e-01 80.5% 88.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 44.0 4.89e-01 81.7% 93.8%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.78e-01 82.9% 79.5%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 43.0 4.91e-01 80.5% 100.0%
3jscA00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.66e-01 85.4% 82.3%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.86e-01 96.3% 76.0%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.61 53.0 4.06e-01 96.3% 90.4%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.61 50.0 4.54e-01 97.6% 67.0%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 46.0 3.57e-01 81.7% 42.2%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.60 45.0 3.35e-01 82.9% 31.0%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 49.0 4.21e-01 89.0% 70.9%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.64e-01 87.8% 84.4%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 41.0 4.03e-01 95.1% 74.7%
5g56A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 38.0 3.32e-01 73.2% 100.0%
3vsfA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 39.0 3.33e-01 76.8% 100.0%
1cjxA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 40.0 3.36e-01 81.7% 75.3%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 47.0 3.49e-01 98.8% 53.3%
1q1uA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 40.0 3.45e-01 82.9% 97.8%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.81e-01 95.1% 97.7%
2p39A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.57e-01 92.7% 94.4%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 37.0 3.25e-01 80.5% 100.0%
2arzA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.51 37.0 3.66e-01 76.8% 78.4%
3q7yA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 37.0 3.32e-01 79.3% 100.0%
4huzA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 35.0 2.92e-01 73.2% 55.6%
3p02A02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.50 39.0 3.21e-01 85.4% 100.0%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4403216 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.80 49.0 5.32e-01 81.7% 72.9%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.80 46.0 5.61e-01 80.5% 87.3%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.80 44.0 5.16e-01 76.8% 76.3%
3945489 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 45.0 5.67e-01 78.0% 94.0%
5042477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 40.0 5.28e-01 76.8% 91.1%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 45.0 5.39e-01 84.1% 85.5%
3264883 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.79 50.0 6.01e-01 80.5% 96.4%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 46.0 4.54e-01 78.0% 56.5%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.78 44.0 5.48e-01 76.8% 92.0%
3391558 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.78 51.0 5.20e-01 90.2% 68.8%
3875218 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.78 45.0 5.06e-01 76.8% 73.8%
5050433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 39.0 5.08e-01 75.6% 88.9%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.77 45.0 4.88e-01 76.8% 68.6%
3877485 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 51.0 5.05e-01 90.2% 64.7%
3181766 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.77 48.0 5.05e-01 82.9% 69.3%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.77 43.0 5.37e-01 76.8% 92.0%
5033075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 45.0 5.31e-01 82.9% 87.3%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.76 50.0 3.87e-01 82.9% 33.3%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 47.0 5.43e-01 81.7% 87.9%
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 43.0 4.64e-01 76.8% 66.2%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 45.0 5.32e-01 82.9% 89.1%
3907619 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 50.0 4.97e-01 93.9% 65.9%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 39.0 5.00e-01 74.4% 91.1%
3389169 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.75 51.0 5.04e-01 90.2% 67.1%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 50.0 5.12e-01 92.7% 71.2%
3230083 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 49.0 4.80e-01 90.2% 62.2%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 45.0 5.35e-01 81.7% 90.9%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.74 43.0 5.15e-01 78.0% 88.9%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 45.0 5.36e-01 86.6% 92.7%
3881123 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 49.0 4.91e-01 93.9% 67.1%
4147056 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 48.0 4.52e-01 90.2% 56.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 43.0 5.15e-01 86.6% 89.1%
3389177 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 49.0 4.56e-01 90.2% 57.0%
3765289 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 49.0 4.75e-01 93.9% 63.3%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 3.98e-01 98.8% 30.7%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 54.0 3.92e-01 98.8% 29.3%
3938389 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 51.0 5.03e-01 90.2% 70.6%
3920666 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 48.0 4.68e-01 90.2% 63.3%
3498280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 51.0 4.39e-01 100.0% 47.7%
3492982 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.71 51.0 4.33e-01 100.0% 45.9%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 45.0 4.84e-01 82.9% 75.7%
3270324 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 43.0 5.34e-01 78.0% 100.0%
3617111 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 48.0 4.72e-01 90.2% 64.4%
4002896 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.71 49.0 4.80e-01 92.7% 65.6%
3883159 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 48.0 4.70e-01 92.7% 64.4%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 42.0 5.01e-01 82.9% 90.9%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 45.0 4.99e-01 86.6% 83.1%
3941004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 48.0 4.89e-01 91.5% 73.8%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.69 48.0 4.22e-01 96.3% 50.0%
3584224 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 45.0 4.17e-01 90.2% 52.4%
3765274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 48.0 4.69e-01 90.2% 66.7%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 45.0 4.94e-01 80.5% 84.6%
4024240 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.77e-01 81.7% 73.8%
3233461 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 47.0 5.41e-01 78.0% 100.0%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 5.20e-01 82.9% 81.2%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.65 52.0 4.58e-01 84.1% 89.6%
5029131 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 47.0 4.04e-01 95.1% 48.5%
4044896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 44.0 4.60e-01 90.2% 77.3%
4589595 4.1.1.447 ↗ beta barrels › SH3 › SH3 › SH3 › PF28065 0.63 41.0 4.49e-01 79.3% 83.1%
5077969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 41.0 4.22e-01 80.5% 68.8%
4282594 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.63 46.0 3.87e-01 95.1% 46.7%
158943 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 44.0 4.50e-01 81.7% 75.9%
3886032 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.62 52.0 4.79e-01 90.2% 70.5%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 3.79e-01 97.6% 36.5%
3716073 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.61 47.0 3.47e-01 81.7% 42.9%
3514522 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.61 50.0 5.24e-01 92.7% 97.3%
3995193 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.61 53.0 3.79e-01 96.3% 36.3%
3479037 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 5.13e-01 98.8% 92.5%
3495480 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 41.0 4.68e-01 78.0% 95.0%
3520312 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.72e-01 89.0% 80.0%
3236054 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 42.0 4.42e-01 81.7% 78.7%
3915732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 43.0 4.24e-01 79.3% 70.6%
3473407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.97e-01 100.0% 94.7%
5040936 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 42.0 3.41e-01 82.9% 39.4%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.62e-01 90.2% 82.4%
4470746 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.58 51.0 4.53e-01 97.6% 73.3%
2725406 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 48.0 4.82e-01 93.9% 90.2%
3858084 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.56 47.0 3.91e-01 90.2% 53.6%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.56 47.0 3.78e-01 96.3% 77.7%
None — 0.55 49.0 2.78e-01 100.0% 9.4%
3992026 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.53 37.0 4.12e-01 93.9% 92.3%
3521181 4.1.1.229 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 3.56e-01 97.6% 44.0%