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NC_041878.1__YP_009594639.1__FDG95_gp099__00099

Bact-Vir

NC_041878.1__YP_009594639.1__FDG95_gp099__00099

Identity

Accession:
NC_041878 ↗
Kingdom:
phage

Quality

85.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Pectobacterium_phage_vB_PcaM_CBB

TaxID: 2772511

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 158-281
PDB
Domain cluster: rep: OR258281.1__WNA15788.1__XaC1_145__00145__D138-242
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 37.0 4.01e-01 89.5% 86.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4012163 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.62 37.0 3.91e-01 91.1% 64.3%
3722745 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.54 32.0 3.87e-01 90.3% 90.0%
3743741 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.53 30.0 3.61e-01 82.3% 82.4%
5054112 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 29.0 3.61e-01 88.7% 96.9%
140973 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.52 37.0 3.07e-01 89.5% 41.0%
D2 high residues 287-410
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 33.0 3.30e-01 100.0% 56.0%
2epbA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 25.0 3.14e-01 81.5% 79.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2984229 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.55 30.0 3.58e-01 81.5% 80.8%
D3 medium residues 7-134
PDB
Domain cluster: rep: MN497415.1__QGH73801.1__X__00010__D3-143
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 29.0 3.62e-01 77.3% 66.7%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.60 25.0 3.60e-01 87.5% 84.2%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 29.0 4.09e-01 76.6% 96.8%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 28.0 3.97e-01 86.7% 100.0%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 28.0 3.61e-01 75.8% 79.5%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 34.0 4.07e-01 85.2% 92.4%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 28.0 3.79e-01 75.8% 90.9%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 30.0 4.01e-01 83.6% 97.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 28.0 3.66e-01 79.7% 83.3%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 27.0 3.60e-01 78.1% 89.4%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 28.0 3.66e-01 80.5% 95.5%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 25.0 3.38e-01 75.0% 87.5%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 25.0 3.30e-01 84.4% 84.3%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 34.0 3.71e-01 85.9% 82.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5035086 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.65 30.0 4.24e-01 82.8% 91.7%
4149372 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 32.0 4.35e-01 93.8% 93.8%
4931657 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.65 31.0 3.81e-01 87.5% 71.2%
4606688 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 31.0 3.88e-01 82.0% 76.0%
3694693 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.64 31.0 4.15e-01 75.8% 89.2%
5028066 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.63 32.0 4.24e-01 93.8% 93.8%
4208450 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 29.0 4.03e-01 84.4% 91.7%
5054268 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.62 31.0 4.19e-01 93.8% 93.8%
2642946 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.62 33.0 3.85e-01 88.3% 71.4%
5023580 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 28.0 3.76e-01 71.1% 81.5%
4983184 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 31.0 4.19e-01 86.7% 100.0%
4399169 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.61 30.0 4.18e-01 88.3% 98.3%
4973274 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.61 28.0 4.06e-01 78.9% 100.0%
3508573 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 41.0 4.43e-01 95.3% 82.9%
4928706 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.60 32.0 4.19e-01 93.8% 94.3%
4071167 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 32.0 4.18e-01 93.8% 94.3%
4315771 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.60 29.0 3.93e-01 87.5% 90.8%
4932378 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 28.0 3.90e-01 89.1% 93.3%
4506761 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 36.0 3.64e-01 100.0% 65.4%
3624986 2.1.1.236 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29292 0.53 32.0 3.89e-01 83.6% 90.6%
3474148 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 39.0 4.08e-01 94.5% 82.5%
4028381 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.53 31.0 3.43e-01 94.5% 70.5%
3415836 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.51 27.0 2.97e-01 81.2% 61.9%