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NC_041878.1__YP_009594729.1__FDG95_gp189__00189

Bact-Vir

NC_041878.1__YP_009594729.1__FDG95_gp189__00189

Identity

Accession:
NC_041878 ↗
Kingdom:
phage

Quality

61.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mimasvirus› Pectobacterium_phage_vB_PcaM_CBB

TaxID: 2772511

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-71_123-133
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.67 38.0 3.83e-01 97.6% 53.5%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.66 36.0 4.66e-01 93.9% 100.0%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.65 44.0 4.52e-01 70.7% 94.9%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.63 36.0 3.10e-01 100.0% 36.5%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.59 37.0 3.48e-01 100.0% 52.5%
4h0oA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 45.0 3.49e-01 86.6% 57.3%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.56 47.0 4.82e-01 91.5% 97.4%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.55 40.0 3.36e-01 79.3% 86.0%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.53 37.0 3.44e-01 75.6% 95.5%
5xnrA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.99e-01 86.6% 44.2%
3krnA00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 38.0 3.01e-01 80.5% 94.0%
2nn6D00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 38.0 2.91e-01 80.5% 93.2%
5gtqA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 40.0 2.76e-01 86.6% 63.2%
4rfbA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 36.0 3.72e-01 90.2% 80.0%
2frxA02 3.10.450.720 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 39.0 3.17e-01 95.1% 42.7%
3d33A00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 37.0 3.60e-01 79.3% 90.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5067782 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.65 32.0 3.51e-01 95.1% 54.3%
4314504 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 52.0 4.40e-01 86.6% 81.5%
169853 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.64 37.0 3.74e-01 97.6% 55.3%
4971601 241.14.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.62 36.0 3.92e-01 100.0% 67.1%
3250283 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.55 35.0 3.09e-01 73.2% 41.5%
4027162 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.54 41.0 2.61e-01 80.5% 23.6%
4100996 243.6.1.6 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › YebU_pre-PUA_dom 0.54 42.0 4.03e-01 95.1% 72.6%
3228567 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.54 38.0 3.19e-01 86.6% 42.9%
4019707 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 37.0 2.95e-01 72.0% 42.4%
3928864 4337.1.1.2 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › Mlh1_C 0.53 45.0 3.71e-01 95.1% 80.6%
4442894 243.6.1.6 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › YebU_pre-PUA_dom 0.53 41.0 4.07e-01 96.3% 81.2%
4122616 4337.1.1.0 ↗ a+b two layers › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain › DNA mismatch repair protein MutL dimerization subdomain 0.52 44.0 4.20e-01 93.9% 94.7%
3444657 5.1.5.98 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › b-prop_At3g26010-like 0.52 42.0 2.85e-01 86.6% 80.0%
3272412 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 40.0 2.93e-01 82.9% 59.1%
4600930 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.52 40.0 4.01e-01 95.1% 81.2%
3737140 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.51 41.0 2.69e-01 86.6% 73.3%
3176337 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 38.0 2.47e-01 79.3% 26.1%
4147624 243.6.1.6 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › YebU_pre-PUA_dom 0.51 39.0 3.85e-01 95.1% 76.7%