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NC_041878.1__YP_009594893.1__FDG95_gp353__00353
Bact-VirNC_041878.1__YP_009594893.1__FDG95_gp353__00353
Identity
- Accession:
- NC_041878 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Taxonomy
TaxID: 2772511
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 67-113
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 51.0 | 4.81e-01 | 85.1% | 60.3% |
| 3r6nA02 | 1.20.58.1060 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.71 | 56.0 | 3.81e-01 | 85.1% | 31.6% |
| 2r9iA00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.69 | 54.0 | 4.63e-01 | 83.0% | 56.3% |
| 2rkhA02 | 1.20.1280.20 | Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain | 0.68 | 53.0 | 4.42e-01 | 87.2% | 51.3% |
| 4n21E00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 51.0 | 3.79e-01 | 83.0% | 62.8% |
| 4bzaA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.67 | 46.0 | 4.10e-01 | 72.3% | 58.8% |
| 1e6vA03 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.67 | 53.0 | 3.48e-01 | 95.7% | 41.3% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.64 | 49.0 | 3.90e-01 | 83.0% | 42.4% |
| 4fwvA02 | 1.20.120.1680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.64 | 51.0 | 3.83e-01 | 95.7% | 94.0% |
| 2gtaA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.63 | 48.0 | 3.80e-01 | 83.0% | 46.4% |
| 6al9B00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.63 | 49.0 | 4.21e-01 | 97.9% | 72.5% |
| 1wazA00 | 1.10.287.910 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › bacterial mercury transporter, merf | 0.63 | 46.0 | 4.67e-01 | 83.0% | 80.4% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.60 | 54.0 | 4.02e-01 | 100.0% | 59.8% |
| 2q5zB00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.60 | 50.0 | 4.03e-01 | 93.6% | 70.2% |
| 3a8tA02 | 1.10.287.890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain | 0.60 | 53.0 | 3.93e-01 | 95.7% | 63.1% |
| 6lo8F01 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.59 | 44.0 | 3.89e-01 | 80.9% | 69.6% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.57 | 47.0 | 4.27e-01 | 100.0% | 75.0% |
| 8ctsB01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 44.0 | 3.82e-01 | 97.9% | 69.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3929410 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.76 | 66.0 | 3.84e-01 | 100.0% | 11.2% |
| 3966580 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.75 | 53.0 | 4.89e-01 | 74.5% | 90.0% |
| 4314535 | 150.5.1.64 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › DUF5344 | 0.74 | 56.0 | 4.62e-01 | 80.9% | 100.0% |
| 3730440 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.74 | 52.0 | 4.51e-01 | 74.5% | 80.0% |
| 4031068 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.72 | 55.0 | 4.51e-01 | 83.0% | 65.9% |
| 3967074 | 601.3.1.15 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PF27543 | 0.72 | 51.0 | 3.82e-01 | 76.6% | 70.8% |
| 5072037 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.71 | 55.0 | 4.74e-01 | 83.0% | 65.7% |
| 3911035 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.70 | 51.0 | 3.55e-01 | 78.7% | 45.2% |
| 3781341 | 3955.1.1.1 ↗ | alpha arrays › Sir2 N-terminal domain › Sir2 N-terminal domain › Sir2 N-terminal domain › DUF592 | 0.70 | 50.0 | 4.18e-01 | 74.5% | 45.0% |
| 3304034 | 5050.1.1.42 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › GDT1 | 0.69 | 58.0 | 3.80e-01 | 95.7% | 81.4% |
| 4995272 | 866.1.1.2 ↗ | a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC | 0.68 | 48.0 | 3.15e-01 | 76.6% | 50.0% |
| 3187391 | 5076.1.1.0 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier | 0.67 | 53.0 | 3.31e-01 | 85.1% | 20.8% |
| 3922588 | 3559.1.1.40 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Bap31 | 0.67 | 54.0 | 3.64e-01 | 91.5% | 24.8% |
| 3428729 | 4018.1.1.2 ↗ | a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P | 0.66 | 48.0 | 3.32e-01 | 78.7% | 24.4% |
| 4123079 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.66 | 54.0 | 5.21e-01 | 97.9% | 80.0% |
| 3877415 | 604.1.1.118 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › GOSR1_N | 0.65 | 58.0 | 3.99e-01 | 100.0% | 70.0% |
| 4590279 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.65 | 49.0 | 3.02e-01 | 85.1% | 14.2% |
| 4024897 | 206.1.1.7 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PI3_PI4_kinase | 0.64 | 55.0 | 3.25e-01 | 97.9% | 37.1% |
| 3386547 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.64 | 54.0 | 4.95e-01 | 100.0% | 73.3% |
| 3363261 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.63 | 45.0 | 3.24e-01 | 76.6% | 31.9% |
| 3821463 | 2004.1.1.33 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind | 0.62 | 48.0 | 3.04e-01 | 83.0% | 30.2% |
| 3509749 | 604.1.1.175 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_Dys-1 | 0.61 | 53.0 | 4.35e-01 | 100.0% | 88.9% |
| 3195272 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.61 | 54.0 | 3.05e-01 | 95.7% | 20.2% |
| 4940379 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.60 | 52.0 | 3.91e-01 | 97.9% | 81.7% |
| 3616121 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.54 | 43.0 | 3.62e-01 | 95.7% | 50.0% |