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NC_041878.1__YP_009594991.1__FDG95_gp528__00451
Bact-VirNC_041878.1__YP_009594991.1__FDG95_gp528__00451
Identity
- Accession:
- NC_041878 ↗
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Taxonomy
TaxID: 2772511
Cluster
View cluster (5 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-132
Domain cluster:
rep: OP292654.1__UYE98818.1__XbC2_392__00389__D7-112
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mi6A01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.62 | 45.0 | 3.33e-01 | 73.8% | 90.9% |
| 2yfoA01 | 2.70.98.60 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis | 0.62 | 46.0 | 3.42e-01 | 76.2% | 91.9% |
| 3k1lA01 | 3.30.457.40 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › | 0.62 | 38.0 | 4.41e-01 | 81.5% | 85.9% |
| 3esiA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 43.0 | 4.40e-01 | 73.1% | 100.0% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.59 | 49.0 | 4.42e-01 | 88.5% | 72.3% |
| 2oq8A00 | 2.60.40.2930 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 45.0 | 4.27e-01 | 78.5% | 78.0% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.57 | 43.0 | 4.25e-01 | 93.1% | 74.3% |
| 6nu7A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 46.0 | 3.45e-01 | 87.7% | 77.7% |
| 1lkeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 40.0 | 3.77e-01 | 92.3% | 60.5% |
| 4ebrA00 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.56 | 42.0 | 3.94e-01 | 78.5% | 85.4% |
| 7ufsA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.55 | 41.0 | 3.20e-01 | 75.4% | 88.1% |
| 1omoA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.55 | 44.0 | 4.19e-01 | 93.1% | 73.2% |
| 1x7dB01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.55 | 41.0 | 3.74e-01 | 90.0% | 59.8% |
| 5bw0F00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.54 | 32.0 | 3.80e-01 | 71.5% | 83.5% |
| 4ok4A02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 41.0 | 3.05e-01 | 80.8% | 94.5% |
| 3sy9C01 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.54 | 41.0 | 3.08e-01 | 80.8% | 43.6% |
| 8fkmA01 | 3.30.1460.50 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.54 | 43.0 | 3.99e-01 | 83.8% | 90.2% |
| 2b4wA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.54 | 45.0 | 3.52e-01 | 91.5% | 87.3% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 43.0 | 4.13e-01 | 90.8% | 75.7% |
| 3k25A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 41.0 | 3.19e-01 | 83.8% | 64.6% |
| 1pu4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.52 | 43.0 | 3.04e-01 | 87.7% | 68.1% |
| 2eabB01 | 2.70.98.50 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans | 0.52 | 40.0 | 3.25e-01 | 80.8% | 93.5% |
| 2rkcA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 45.0 | 3.18e-01 | 94.6% | 93.0% |
| 4xmeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 43.0 | 3.84e-01 | 89.2% | 77.2% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.51 | 43.0 | 4.12e-01 | 93.1% | 78.7% |
| 3nreA00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 42.0 | 3.24e-01 | 87.7% | 69.1% |
| 2xzhA00 | 2.130.10.110 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain | 0.51 | 43.0 | 3.16e-01 | 92.3% | 84.1% |
| 1pzdA01 | 2.60.40.1480 | Mainly Beta › Sandwich › Immunoglobulin-like › Coatomer, gamma subunit, appendage domain | 0.51 | 36.0 | 3.37e-01 | 72.3% | 97.4% |
| 4ge1C00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.50 | 40.0 | 3.53e-01 | 84.6% | 68.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5038627 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.67 | 48.0 | 3.50e-01 | 73.1% | 86.5% |
| 3827531 | 844.1.1.5 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 | 0.63 | 56.0 | 4.46e-01 | 96.9% | 98.1% |
| 3972703 | 9.1.1.17 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF | 0.62 | 41.0 | 4.47e-01 | 75.4% | 81.9% |
| 4265925 | 3518.1.2.0 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex | 0.62 | 50.0 | 4.81e-01 | 92.3% | 75.8% |
| 4008120 | 5.1.5.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 | 0.61 | 49.0 | 5.10e-01 | 83.8% | 91.7% |
| 3428912 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.60 | 50.0 | 3.71e-01 | 89.2% | 92.3% |
| 169280 | 222.1.1.23 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ApeI-like | 0.60 | 43.0 | 4.40e-01 | 73.1% | 100.0% |
| 4610039 | 5084.5.4.9 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › UPF0164 | 0.59 | 49.0 | 3.69e-01 | 88.5% | 92.4% |
| 3989853 | 77.1.1.13 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › CFSR | 0.59 | 42.0 | 3.20e-01 | 73.8% | 62.9% |
| 1710650 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.59 | 39.0 | 4.37e-01 | 86.9% | 87.3% |
| 3934509 | 3369.1.1.0 ↗ | beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 | 0.58 | 53.0 | 4.69e-01 | 97.7% | 77.8% |
| 3512069 | 5084.5.1.3 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 | 0.58 | 43.0 | 3.73e-01 | 76.2% | 72.0% |
| 4285781 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.57 | 43.0 | 3.25e-01 | 77.7% | 84.1% |
| 4024938 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.57 | 44.0 | 3.84e-01 | 80.8% | 96.8% |
| 3695698 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.57 | 41.0 | 4.01e-01 | 90.0% | 69.3% |
| 3965134 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.57 | 42.0 | 4.50e-01 | 92.3% | 88.7% |
| 3279448 | 9.1.1.17 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › MoaF | 0.57 | 43.0 | 4.27e-01 | 80.8% | 76.7% |
| 3282535 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.56 | 41.0 | 3.23e-01 | 75.4% | 87.3% |
| 5076441 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.56 | 43.0 | 3.36e-01 | 80.0% | 78.8% |
| 1147819 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.55 | 36.0 | 4.10e-01 | 83.1% | 86.9% |
| 3279607 | 9.3.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like | 0.55 | 36.0 | 4.00e-01 | 92.3% | 85.0% |
| 3593518 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 44.0 | 3.97e-01 | 83.8% | 91.4% |
| 3993370 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.55 | 43.0 | 3.37e-01 | 83.8% | 50.3% |
| 4996269 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.55 | 49.0 | 4.11e-01 | 100.0% | 87.6% |
| 437290 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.55 | 43.0 | 4.30e-01 | 96.9% | 80.4% |
| 4003669 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.54 | 43.0 | 2.94e-01 | 83.8% | 87.7% |
| 3512529 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.54 | 42.0 | 3.94e-01 | 81.5% | 82.5% |
| 3728883 | 3692.1.1.0 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain | 0.54 | 42.0 | 4.04e-01 | 90.0% | 70.6% |
| 3706858 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 43.0 | 4.32e-01 | 84.6% | 82.2% |
| 3607354 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 42.0 | 4.19e-01 | 85.4% | 77.5% |
| 3709162 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 46.0 | 3.43e-01 | 92.3% | 91.8% |
| 3181589 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.54 | 44.0 | 3.60e-01 | 86.9% | 87.7% |
| 3261183 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.54 | 36.0 | 3.33e-01 | 79.2% | 50.9% |
| 3502994 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.54 | 47.0 | 4.71e-01 | 93.8% | 92.3% |
| 3427875 | 241.15.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N | 0.53 | 42.0 | 4.02e-01 | 84.6% | 89.0% |
| 3168944 | 5.1.4.97 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop | 0.53 | 45.0 | 3.17e-01 | 92.3% | 93.1% |
| 3989344 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.53 | 36.0 | 3.74e-01 | 70.8% | 100.0% |
| 3892200 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.53 | 42.0 | 3.46e-01 | 84.6% | 54.5% |
| 3320577 | 10.1.1.2 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB | 0.52 | 42.0 | 3.35e-01 | 85.4% | 95.8% |
| 3785596 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.52 | 42.0 | 3.89e-01 | 85.4% | 80.6% |
| 4426077 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.52 | 41.0 | 3.89e-01 | 83.1% | 83.9% |
| 4890223 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 41.0 | 3.01e-01 | 83.8% | 80.9% |
| 3303879 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.52 | 42.0 | 3.49e-01 | 88.5% | 62.1% |
| 4943345 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 36.0 | 4.01e-01 | 71.5% | 92.0% |
| 140642 | 12.3.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim | 0.51 | 42.0 | 3.24e-01 | 87.7% | 69.1% |