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NC_041878.1__YP_009595065.1__FDG95_gp454__00525

Bact-Vir

NC_041878.1__YP_009595065.1__FDG95_gp454__00525

Identity

Accession:
NC_041878 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 190-297
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q5nA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.59 38.0 4.23e-01 71.3% 86.4%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3885941 101.1.1.132 alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N 0.54 33.0 3.95e-01 70.4% 92.9%
3605439 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.52 27.0 3.24e-01 76.9% 75.7%
D2 medium residues 1-111
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u2xF00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.65 56.0 4.85e-01 97.3% 94.9%
4by6D02 1.25.40.800 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 57.0 4.58e-01 100.0% 79.1%
2lo6A00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 51.0 4.66e-01 95.5% 96.8%
2qyuA02 1.25.40.300 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein 0.56 47.0 4.00e-01 94.6% 85.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3711335 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 63.0 4.99e-01 100.0% 76.5%
3825199 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.60 51.0 4.22e-01 97.3% 68.8%
3997708 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 42.0 4.01e-01 75.7% 99.3%
3679473 109.4.1.15 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS 0.57 48.0 4.51e-01 94.6% 89.3%
D3 medium residues 112-187
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yzfA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 46.0 3.52e-01 93.4% 49.7%
4q9aA00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.56 45.0 3.36e-01 92.1% 49.3%