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NC_041878.1__YP_009595065.1__FDG95_gp454__00525
Bact-VirNC_041878.1__YP_009595065.1__FDG95_gp454__00525
Identity
- Accession:
- NC_041878 ↗
- Kingdom:
- phage
Quality
81.7
mean pLDDT
Taxonomy
TaxID: 2772511
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 190-297
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q5nA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.59 | 38.0 | 4.23e-01 | 71.3% | 86.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3885941 | 101.1.1.132 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N | 0.54 | 33.0 | 3.95e-01 | 70.4% | 92.9% |
| 3605439 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.52 | 27.0 | 3.24e-01 | 76.9% | 75.7% |
D2
medium
residues 1-111
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4u2xF00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.65 | 56.0 | 4.85e-01 | 97.3% | 94.9% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 57.0 | 4.58e-01 | 100.0% | 79.1% |
| 2lo6A00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.61 | 51.0 | 4.66e-01 | 95.5% | 96.8% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.56 | 47.0 | 4.00e-01 | 94.6% | 85.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3711335 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 63.0 | 4.99e-01 | 100.0% | 76.5% |
| 3825199 | 109.4.1.883 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 | 0.60 | 51.0 | 4.22e-01 | 97.3% | 68.8% |
| 3997708 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 42.0 | 4.01e-01 | 75.7% | 99.3% |
| 3679473 | 109.4.1.15 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › VHS | 0.57 | 48.0 | 4.51e-01 | 94.6% | 89.3% |
D3
medium
residues 112-187
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yzfA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 46.0 | 3.52e-01 | 93.4% | 49.7% |
| 4q9aA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.56 | 45.0 | 3.36e-01 | 92.1% | 49.3% |