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NC_041883.1__YP_009595815.1__FDH00_gp57__00057
Bact-VirNC_041883.1__YP_009595815.1__FDH00_gp57__00057
Identity
- Accession:
- NC_041883 ↗
- Kingdom:
- phage
Quality
70.9
mean pLDDT
Taxonomy
TaxID: 1821548
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-85
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.68 | 42.0 | 4.72e-01 | 97.4% | 83.9% |
| 6j7cA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.65 | 48.0 | 3.73e-01 | 80.3% | 36.4% |
| 4lb0A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.62 | 46.0 | 3.61e-01 | 80.3% | 41.5% |
| 6r77A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.61 | 44.0 | 3.50e-01 | 80.3% | 36.1% |
| 4d02A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.55 | 44.0 | 3.15e-01 | 89.5% | 85.0% |
| 1x6cA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.54 | 48.0 | 4.16e-01 | 100.0% | 83.1% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.51 | 39.0 | 3.36e-01 | 82.9% | 70.8% |
| 4mn5A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 38.0 | 3.50e-01 | 82.9% | 69.9% |
| 1dfaA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.50 | 36.0 | 2.73e-01 | 77.6% | 93.1% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4288786 | 286.1.1.4 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase | 0.62 | 46.0 | 3.65e-01 | 82.9% | 37.6% |
| 4026726 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 39.0 | 3.19e-01 | 71.1% | 54.5% |
| 3402677 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.55 | 36.0 | 4.07e-01 | 72.4% | 89.7% |
| 3412576 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.53 | 39.0 | 3.21e-01 | 78.9% | 55.2% |
| 3658323 | 284.1.2.1 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C | 0.53 | 44.0 | 3.95e-01 | 90.8% | 93.3% |
| 4484790 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.53 | 40.0 | 3.43e-01 | 81.6% | 59.2% |
| 3239313 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.52 | 40.0 | 2.73e-01 | 85.5% | 22.8% |
| 4012945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 37.0 | 3.79e-01 | 76.3% | 100.0% |
| 4587154 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.52 | 39.0 | 3.23e-01 | 84.2% | 47.3% |
| 4949933 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 41.0 | 2.93e-01 | 92.1% | 29.1% |
| 3967308 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.51 | 41.0 | 3.28e-01 | 92.1% | 46.7% |
| 1175108 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.51 | 38.0 | 3.35e-01 | 78.9% | 70.5% |
| 4580145 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.50 | 40.0 | 3.93e-01 | 96.1% | 77.6% |
| 5018029 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 40.0 | 3.43e-01 | 85.5% | 67.5% |