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NC_041887.1__YP_009596367.1__FDH04_gp065__00065
Bact-VirNC_041887.1__YP_009596367.1__FDH04_gp065__00065
Identity
- Accession:
- NC_041887 ↗
- Kingdom:
- phage
Quality
86.6
mean pLDDT
Taxonomy
TaxID: 1897437
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 54-259
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04228.20 best | Zn_peptidase | 181.5 | 3.60e-53 | 98.5% | 66.5% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ip8A00 | 1.10.132.110 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein | 0.61 | 28.0 | 3.77e-01 | 98.5% | 81.0% |
| 2w9zA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 34.0 | 4.14e-01 | 85.4% | 83.5% |
| 3dyjA02 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.55 | 27.0 | 3.07e-01 | 82.5% | 60.3% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 38.0 | 3.98e-01 | 97.6% | 81.1% |
| 1cpcB00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.53 | 34.0 | 3.67e-01 | 73.8% | 76.2% |
| 1jwnA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 32.0 | 3.76e-01 | 90.3% | 86.2% |
| 2v6kA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 27.0 | 3.33e-01 | 97.1% | 78.5% |
| 1eb6A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.51 | 40.0 | 4.27e-01 | 97.1% | 94.9% |
| 1dtoA01 | 1.10.287.30 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 | 0.50 | 25.0 | 3.38e-01 | 82.5% | 92.2% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3283234 | 2498.1.1.63 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Zn_peptidase | 0.97 | 95.0 | 8.68e-01 | 100.0% | 81.6% |
| 3288863 | 2498.1.1.63 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Zn_peptidase | 0.83 | 78.0 | 7.69e-01 | 100.0% | 93.4% |
| 3962236 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.79 | 55.0 | 6.00e-01 | 98.1% | 82.9% |
| 3682363 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.58 | 36.0 | 4.47e-01 | 97.1% | 99.2% |
| None | — | 0.57 | 40.0 | 3.47e-01 | 81.1% | 46.5% | |
| 4326246 | 6164.1.1.4 ↗ | alpha bundles › Bestrophin › Bestrophin › Bestrophin › Bestrophin_2 | 0.50 | 31.0 | 2.79e-01 | 86.4% | 41.7% |
D2
medium
residues 1-53