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NC_041888.1__YP_009596658.1__FDH05_gp73__00073

Bact-Vir

NC_041888.1__YP_009596658.1__FDH05_gp73__00073

Identity

Accession:
NC_041888 ↗
Kingdom:
phage

Quality

69.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tortellinivirus› Mycobacterium_phage_Tortellini

TaxID: 1897497

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-64
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.74 60.0 6.30e-01 98.4% 94.7%
2uuzB00 1.10.10.2020 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam 0.68 62.0 5.48e-01 96.8% 78.8%
4uavA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 57.0 5.17e-01 98.4% 98.8%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.65 51.0 3.38e-01 83.9% 54.5%
3fxhA00 1.20.120.600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Crystal structure from the mobile metagenome of halifax harbour sewage outfall 0.62 47.0 3.85e-01 96.8% 44.2%
1lkvX02 1.10.220.30 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Flagellar motor switch protein FliG, alpha-alpha superhelical domain 0.61 53.0 4.21e-01 100.0% 68.9%
6qv3A05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 54.0 4.72e-01 100.0% 72.0%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 53.0 4.43e-01 100.0% 65.7%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.57 50.0 4.39e-01 100.0% 78.1%
7xqp901 1.10.3460.10 Mainly Alpha › Orthogonal Bundle › Chlorophyll a-b binding protein › Chlorophyll a/b binding protein domain 0.57 50.0 3.46e-01 96.8% 63.5%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.57 39.0 3.41e-01 72.6% 57.4%
4nv1E01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.56 49.0 3.52e-01 100.0% 45.7%
1v9mA03 1.20.1690.10 Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain 0.56 48.0 4.15e-01 95.2% 96.9%
3t54A01 3.40.50.11950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 46.0 3.76e-01 91.9% 95.7%
2n5hA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.55 47.0 4.20e-01 96.8% 98.9%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 50.0 4.20e-01 100.0% 100.0%
4aybA04 1.10.10.1950 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 43.0 4.17e-01 96.8% 77.0%
2h7bA01 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.51 36.0 3.22e-01 77.4% 93.8%
2p0tA01 1.10.60.30 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains 0.51 43.0 4.11e-01 100.0% 81.6%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3949921 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.69 51.0 3.97e-01 77.4% 66.9%
4927487 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.69 44.0 4.13e-01 96.8% 53.3%
3807233 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.69 58.0 4.28e-01 96.8% 36.8%
1945601 6027.1.1.1 ↗ alpha arrays › Host-nuclease inhibitor protein Gam › Host-nuclease inhibitor protein Gam › Host-nuclease inhibitor protein Gam › Gam 0.68 61.0 5.15e-01 96.8% 68.4%
2540675 5063.1.1.1 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK 0.68 61.0 5.63e-01 98.4% 89.7%
3238639 509.1.1.14 ↗ alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › ANIS5_cation-bd 0.67 43.0 4.26e-01 80.6% 63.1%
4024092 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 40.0 4.40e-01 74.2% 76.0%
3896752 632.3.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain 0.63 45.0 4.65e-01 77.4% 78.3%
3574560 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 53.0 4.76e-01 100.0% 96.7%
3809113 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.60 54.0 4.68e-01 100.0% 70.5%
3652381 101.1.2.392 ↗ alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.60 54.0 4.37e-01 100.0% 58.3%
3706202 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.59 46.0 3.98e-01 88.7% 78.1%
3313802 7516.1.1.47 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Cellulose_synt 0.59 48.0 2.72e-01 90.3% 15.4%
3510680 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.59 45.0 4.30e-01 80.6% 92.9%
5050290 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.32e-01 96.8% 76.5%
4104255 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 53.0 4.37e-01 98.4% 92.4%
5069953 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.54 48.0 3.56e-01 98.4% 43.9%