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NC_041892.1__YP_009596866.1__FDH09_gp02__00002

Bact-Vir

NC_041892.1__YP_009596866.1__FDH09_gp02__00002

Identity

Accession:
NC_041892 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Anatolevirus› Propionibacterium_phage_B3

TaxID: 1897533

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-58
PDB
Domain cluster: representative
D2 high residues 68-160
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF14279.13 best HNH_5 32.9 6.90e-08 66.7% 60.7%
PF01844.30 HNH 45.0 1.30e-11 60.2% 100.0%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7kA00 3.30.40.220 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.73 56.0 4.76e-01 79.6% 72.5%
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.71 51.0 5.44e-01 79.6% 84.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952818 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.91 61.0 6.88e-01 89.2% 86.5%
5070853 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.91 62.0 6.48e-01 80.6% 76.5%
3950953 377.1.1.78 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 0.90 61.0 7.08e-01 89.2% 92.9%
3277754 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.90 61.0 7.06e-01 90.3% 92.9%
3965880 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.89 62.0 6.39e-01 72.0% 84.3%
4999440 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.88 64.0 6.68e-01 88.2% 81.2%
3963404 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.88 62.0 6.17e-01 72.0% 78.9%
4937899 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.87 50.0 5.16e-01 71.0% 60.0%
4998487 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.87 62.0 6.23e-01 88.2% 72.6%
4959591 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.83 54.0 6.36e-01 76.3% 93.8%
4951302 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.83 51.0 6.04e-01 73.1% 89.2%
3307439 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.82 62.0 5.64e-01 79.6% 67.2%
5049537 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 50.0 5.00e-01 73.1% 61.7%
4941657 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.80 59.0 6.56e-01 80.6% 94.7%
3952776 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.80 49.0 5.77e-01 77.4% 87.7%
4932123 377.7.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH 0.80 56.0 6.35e-01 84.9% 95.7%
5019258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.80 59.0 6.30e-01 80.6% 88.7%
4943720 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.78 59.0 5.31e-01 93.5% 59.2%
4187709 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 67.0 4.23e-01 93.5% 21.2%
3952892 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.76 53.0 4.77e-01 88.2% 53.6%
4989310 378.1.1.27 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 0.76 57.0 4.42e-01 82.8% 38.6%
3397473 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 55.0 5.07e-01 89.2% 59.2%
5016552 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.75 60.0 5.60e-01 89.2% 70.0%
4986026 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.75 57.0 4.40e-01 82.8% 39.5%
2550470 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.74 64.0 5.23e-01 93.5% 53.6%
2991844 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.74 64.0 6.08e-01 93.5% 79.8%
2485694 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.73 58.0 5.07e-01 89.2% 58.2%
185780 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 52.0 5.16e-01 81.7% 71.1%
4839754 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.72 60.0 5.01e-01 93.5% 53.9%
2663386 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.72 63.0 5.08e-01 93.5% 53.3%
1684075 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.72 62.0 5.04e-01 92.5% 53.3%
3249964 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.72 53.0 5.74e-01 77.4% 100.0%
3590055 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.70 54.0 4.98e-01 80.6% 73.0%
2859872 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.69 54.0 4.30e-01 93.5% 41.3%
4922670 3820.1.1.6 ↗ a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI, Cas9_RuvC 0.69 46.0 3.72e-01 75.3% 37.3%
1291965 378.1.1.16 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DraIII 0.68 52.0 3.96e-01 80.6% 70.2%
3587782 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.67 54.0 5.06e-01 83.9% 74.5%
3879791 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 56.0 4.16e-01 90.3% 43.6%
3953218 378.1.1.23 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.66 58.0 4.81e-01 96.8% 56.1%
4966182 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.66 58.0 5.18e-01 93.5% 77.6%
3561303 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 56.0 4.56e-01 90.3% 59.4%
3957069 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.66 57.0 4.74e-01 96.8% 54.4%
3953524 378.1.1.23 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.66 57.0 4.77e-01 96.8% 56.1%
4981807 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.65 56.0 4.69e-01 93.5% 63.2%
3317146 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.64 60.0 5.41e-01 100.0% 88.7%
3952384 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.64 56.0 5.56e-01 95.7% 91.6%
3948700 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.64 55.0 5.00e-01 93.5% 79.8%
3440476 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.64 59.0 5.43e-01 100.0% 91.6%
3198748 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.64 55.0 4.67e-01 93.5% 82.0%
2449258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.63 52.0 4.32e-01 89.2% 78.7%
4938104 378.1.1.20 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF1524 0.61 54.0 4.61e-01 93.5% 82.9%
4448977 378.1.1.15 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Col-Pyo_DNase 0.60 41.0 3.59e-01 71.0% 84.3%
3286852 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.55 48.0 4.74e-01 94.6% 92.0%