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NC_041892.1__YP_009596907.1__FDH09_gp43__00043

Bact-Vir

NC_041892.1__YP_009596907.1__FDH09_gp43__00043

Identity

Accession:
NC_041892 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Anatolevirus› Propionibacterium_phage_B3

TaxID: 1897533

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-28_123-191
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.60 42.0 3.41e-01 72.4% 95.9%
1p5uB00 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.60 42.0 3.47e-01 75.0% 83.9%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 40.0 3.45e-01 71.1% 94.4%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.45e-01 72.4% 99.1%
2bzlA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 43.0 2.95e-01 89.5% 70.4%
3ep0A00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.53 36.0 3.23e-01 71.1% 63.7%
2qpvA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 37.0 3.19e-01 76.3% 93.2%
2dx0B01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 34.0 3.47e-01 71.1% 68.0%
1ix2A00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 38.0 3.51e-01 78.9% 75.5%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 28.0 3.15e-01 86.8% 70.2%
2w38A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.34e-01 76.3% 84.6%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.50 35.0 3.31e-01 72.4% 72.8%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3471641 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 42.0 3.64e-01 73.7% 100.0%
4028425 220.1.1.286 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_CERLI1 0.60 42.0 3.62e-01 75.0% 88.5%
3263957 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 3.63e-01 72.4% 66.3%
3887025 11.1.1.117 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EpoR_lig-bind 0.54 39.0 3.64e-01 78.9% 80.0%
4084910 304.4.1.3 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.53 40.0 3.56e-01 84.2% 89.2%
3838331 11.1.1.456 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › YtkA 0.53 37.0 3.35e-01 73.7% 70.5%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.52 38.0 3.44e-01 80.3% 100.0%
3491151 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.34e-01 90.8% 62.0%
D2 medium residues 63-122
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7essA01 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.53 31.0 2.53e-01 95.0% 25.0%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.52 35.0 3.32e-01 90.0% 55.1%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.51 31.0 2.77e-01 95.0% 36.8%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 40.0 3.26e-01 96.7% 72.1%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3844241 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 37.0 3.50e-01 95.0% 50.7%
3966547 3523.1.1.0 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) 0.54 33.0 2.90e-01 100.0% 36.0%
4955387 3696.1.1.2 ↗ a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › XPB_DRD 0.54 33.0 3.52e-01 78.3% 72.0%
3630567 11.1.1.673 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.52 43.0 3.57e-01 100.0% 90.0%
4537543 3103.1.1.4 ↗ alpha arrays › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Uncharacterized protein yqbN › Phage_TAC_9 0.52 44.0 3.54e-01 100.0% 91.2%
3616943 11.1.1.673 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.51 42.0 3.69e-01 100.0% 97.0%