←Back to structures

NC_041894.1__YP_009596997.1__FDH11_gp15__00015

Bact-Vir

NC_041894.1__YP_009596997.1__FDH11_gp15__00015

Identity

Accession:
NC_041894 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Doucettevirus› Propionibacterium_phage_E6

TaxID: 1897536

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-129
PDB
Domain cluster: rep: MK061416.1__AZF88196.1__SEA_SPARTOI_12__00013__D39-119
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5aj3N01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 39.0 3.87e-01 98.8% 57.1%
8d8lN01 1.10.287.1480 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 39.0 3.91e-01 88.4% 59.3%
8b9zK01 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 42.0 4.12e-01 74.4% 75.8%
1lfkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 48.0 3.25e-01 96.5% 36.8%
1uzcA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.57 37.0 3.99e-01 95.3% 81.2%
1gwiA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 48.0 3.11e-01 94.2% 64.2%
1xttB00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 51.0 3.79e-01 100.0% 87.0%
2x19B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 44.0 2.48e-01 84.9% 9.6%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.54 39.0 4.05e-01 98.8% 79.3%
4hojA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 44.0 4.09e-01 84.9% 87.4%
5haxA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 41.0 2.87e-01 79.1% 49.8%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 43.0 3.97e-01 83.7% 84.0%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.53 41.0 4.01e-01 86.0% 85.9%
1z9eA00 1.20.930.10 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.53 42.0 4.28e-01 83.7% 97.6%
1t33A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 44.0 3.67e-01 94.2% 54.4%
3i7aA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 40.0 2.92e-01 84.9% 65.9%
1ya0A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 42.0 3.15e-01 84.9% 37.9%
3vhlA02 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.53 42.0 3.75e-01 86.0% 94.2%
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.52 43.0 2.90e-01 96.5% 65.4%
2gnoA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.52 38.0 3.70e-01 79.1% 92.0%
1gw5B00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 40.0 2.42e-01 82.6% 13.5%
1krrA00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.52 41.0 3.19e-01 88.4% 51.0%
1wn0A00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 45.0 3.95e-01 100.0% 87.8%
5c4yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 42.0 3.67e-01 93.0% 72.1%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.51 40.0 3.48e-01 83.7% 78.5%
3craA02 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.51 34.0 3.02e-01 74.4% 46.1%
4mhcA01 1.20.58.1780 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 41.0 2.86e-01 84.9% 58.8%
2qyuA02 1.25.40.300 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein 0.50 39.0 3.08e-01 87.2% 45.6%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4244702 109.4.1.19 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vitellogenin_N 0.63 43.0 3.23e-01 86.0% 28.8%
3478559 109.4.1.1819 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26714 0.62 47.0 2.64e-01 83.7% 13.8%
3204982 109.4.1.576 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-5 0.61 45.0 2.51e-01 77.9% 96.1%
4426202 109.4.1.1298 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1, PF28415 0.60 46.0 3.11e-01 80.2% 30.0%
4660776 109.4.1.2020 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, Fes1, PF28415 0.60 46.0 3.36e-01 80.2% 40.0%
3632017 109.4.1.404 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1 0.59 45.0 3.26e-01 80.2% 37.3%
3894431 109.4.1.1298 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1, PF28415 0.59 45.0 2.96e-01 80.2% 24.9%
3813020 109.4.1.546 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ecm29 0.58 43.0 2.84e-01 77.9% 22.5%
3907756 109.4.1.365 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RTTN_N 0.57 50.0 2.65e-01 95.3% 6.4%
3226696 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 45.0 3.40e-01 83.7% 47.4%
3630025 109.4.1.1125 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TAF2_C 0.56 39.0 2.63e-01 74.4% 27.7%
3172208 109.4.1.1298 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1, PF28415 0.56 44.0 3.01e-01 83.7% 30.3%
3234369 109.4.1.156 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UNC45-central 0.56 44.0 2.73e-01 83.7% 23.7%
4007898 3355.1.1.11 ↗ alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › GntP_permease 0.55 43.0 2.76e-01 86.0% 84.2%
3553985 109.4.1.148 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind,EST1 0.55 43.0 2.71e-01 86.0% 31.0%
3400006 109.4.1.1623 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS7_N, INTS7_HB 0.55 39.0 2.23e-01 73.3% 7.8%
3748524 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.54 37.0 2.50e-01 70.9% 21.7%
3636022 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.54 44.0 2.98e-01 96.5% 63.1%
4943436 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.54 42.0 2.83e-01 81.4% 25.4%
3670612 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.54 42.0 2.66e-01 83.7% 17.3%
5047968 109.4.1.207 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.54 40.0 2.69e-01 81.4% 21.6%
3721236 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.53 42.0 2.63e-01 83.7% 16.8%
4360469 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.52 39.0 3.63e-01 79.1% 90.9%
3369650 601.3.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain 0.52 46.0 3.89e-01 100.0% 76.0%
3714594 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.50e-01 86.0% 58.6%
3408404 109.4.1.1918 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, Xpo1, PF26714 0.52 42.0 2.38e-01 88.4% 9.8%
3678601 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.51 39.0 3.13e-01 77.9% 69.3%
3549899 109.4.1.106 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CPL 0.51 40.0 2.46e-01 84.9% 14.1%
4462884 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.51 42.0 2.36e-01 90.7% 9.1%
3821174 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.51 40.0 2.37e-01 84.9% 47.4%
3906077 109.4.1.14 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MyTH4 0.51 44.0 3.20e-01 94.2% 70.7%
4075352 109.4.1.114 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-T 0.51 44.0 2.49e-01 97.7% 9.5%
3322832 109.4.1.555 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-5 0.50 43.0 2.49e-01 95.3% 14.8%