←Back to structures
NC_041895.1__YP_009597090.1__FDH12_gp48__00048
Bact-VirNC_041895.1__YP_009597090.1__FDH12_gp48__00048
Identity
- Accession:
- NC_041895 ↗
- Kingdom:
- phage
Quality
87.5
mean pLDDT
Taxonomy
TaxID: 1897537
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-98
Domain cluster:
rep: NC_042336.1__YP_009638413.1__FGG38_gp52__00052__D21-92
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02467.22 best | Whib | 46.9 | 4.60e-12 | 69.3% | 67.7% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.58 | 43.0 | 4.04e-01 | 80.0% | 84.5% |
| 3cwzB01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.53 | 39.0 | 3.22e-01 | 98.7% | 41.1% |
| 1yqgA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.52 | 37.0 | 3.27e-01 | 76.0% | 61.9% |
| 1op1A00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.52 | 30.0 | 2.96e-01 | 97.3% | 51.2% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3959743 | 1022.2.1.0 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 | 0.88 | 62.0 | 6.71e-01 | 73.3% | 84.6% |
| 2988223 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.86 | 62.0 | 5.94e-01 | 74.7% | 65.9% |
| 3959281 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.81 | 55.0 | 6.39e-01 | 89.3% | 96.4% |
| 3286828 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.79 | 54.0 | 5.80e-01 | 88.0% | 81.5% |
| 2724064 | 1022.2.1.1 ↗ | alpha arrays › 4Fe-4S binding domain in Dna2 › 4Fe-4S protein WhiB1 › 4Fe-4S protein WhiB1 › Whib | 0.78 | 55.0 | 5.38e-01 | 88.0% | 68.8% |
| 2482316 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.54 | 42.0 | 3.44e-01 | 86.7% | 55.2% |
| 4301127 | 3754.1.1.2 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4,MraY_sig1 | 0.54 | 47.0 | 3.09e-01 | 100.0% | 69.9% |