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NC_041895.1__YP_009597105.1__FDH12_gp63__00063

Bact-Vir

NC_041895.1__YP_009597105.1__FDH12_gp63__00063

Identity

Accession:
NC_041895 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Doucettevirus› Propionibacterium_phage_G4

TaxID: 1897537

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-71
PDB
Domain cluster: rep: NC_049478.1__YP_009885131.1__HYQ08_gp051__00051__D10-78
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d8bB02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.71 59.0 5.63e-01 94.2% 97.6%
6p10B02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.68 58.0 5.39e-01 98.6% 92.3%
2ekfA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 42.0 4.86e-01 87.0% 95.7%
2di0A01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 42.0 4.79e-01 82.6% 100.0%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 46.0 4.13e-01 76.8% 60.6%
2lwxA00 1.10.8.840 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain 0.60 46.0 4.32e-01 85.5% 76.1%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.60 44.0 4.21e-01 79.7% 85.2%
2qq8A02 1.10.8.270 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains 0.57 46.0 4.26e-01 95.7% 79.2%
2jpfA01 1.20.58.960 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Protein of unknown function (DUF3120) 0.53 36.0 3.41e-01 71.0% 75.9%
3zssA02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 36.0 3.51e-01 72.5% 74.7%
1nthA00 3.20.20.460 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Monomethylamine methyltransferase MtmB 0.53 43.0 2.68e-01 94.2% 74.4%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3406415 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 62.0 6.21e-01 94.2% 98.6%
3613132 148.1.3.6 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Vps4_C,AAA_lid_3 0.69 59.0 4.70e-01 98.6% 91.0%
4163949 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 54.0 5.23e-01 89.9% 85.0%
1233085 148.1.3.6 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Vps4_C,AAA_lid_3 0.67 57.0 5.02e-01 98.6% 77.6%
3583897 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 56.0 5.62e-01 100.0% 100.0%
5055984 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 52.0 4.19e-01 100.0% 94.8%
3413964 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 46.0 4.49e-01 95.7% 92.5%
3238984 138.1.1.2 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C 0.56 39.0 3.51e-01 73.9% 65.0%
4145413 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.51 37.0 2.71e-01 78.3% 28.8%