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NC_041911.1__YP_009598725.1__FDH28_gp032__00032

Bact-Vir

Identity

Accession:: NC_041911 ↗
Kingdom:: phage

Quality

82.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Ripduovirus› Ralstonia_phage_RP12

TaxID: 1923889

Cluster

View cluster (6 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-32_134-238

PDB

Domain cluster: rep: IMGVR_UViG_3300035202_000225-3300035202-Ga0373640_0021469_3935_4498__D10-185

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF18406.7 best	DUF1281_C	29.5	7.90e-07	63.4%	67.0%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ijrA01	3.30.70.1270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Api92-like domains	0.83	57.0	6.72e-01	98.5%	96.9%
1kviA00	3.30.70.100	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.65	37.0	4.59e-01	98.5%	92.4%
2oq8A00	2.60.40.2930	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.60	36.0	3.47e-01	100.0%	52.0%
4dezA01	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.60	43.0	4.85e-01	99.3%	100.0%
5wm1A02	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.59	45.0	4.96e-01	97.8%	98.2%
2e5jA01	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.58	34.0	4.02e-01	98.5%	87.5%
3cu7A12	2.60.40.690	Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain	0.57	39.0	3.91e-01	70.1%	71.0%
3zt9A00	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.57	44.0	3.92e-01	100.0%	57.3%
3rnrB00	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.53	49.0	4.17e-01	100.0%	68.7%
1ct9A01	3.60.20.10	Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain	0.52	42.0	3.81e-01	97.0%	62.0%
4jndA02	3.60.40.10	Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain	0.51	47.0	3.69e-01	100.0%	59.4%
1ugiD00	3.10.450.20	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor	0.51	24.0	3.06e-01	100.0%	73.2%
2mobA00	3.90.56.10	Alpha Beta › Alpha-Beta Complex › Phenol Hydroxylase P2 Protein › Monooxygenase component MmoB/DmpM	0.51	34.0	3.87e-01	97.0%	95.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3728157	304.7.1.0 ↗	a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors	0.68	36.0	4.89e-01	100.0%	100.0%
5023775	2.1.1.374 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2110_C	0.68	39.0	3.49e-01	100.0%	41.1%
4970578	304.11.1.16 ↗	a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › DUF2110_C	0.63	38.0	4.42e-01	100.0%	86.7%
3723377	304.3.1.1 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA	0.63	47.0	4.87e-01	92.5%	82.4%
3916901	304.3.1.0 ↗	a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain	0.62	39.0	4.71e-01	94.0%	94.4%
3686938	304.9.1.0 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD	0.62	37.0	4.50e-01	95.5%	92.9%
3917113	304.9.1.63 ↗	a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_PARP14_3	0.57	35.0	4.28e-01	97.8%	95.3%
4450157	321.1.1.7 ↗	a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2	0.52	44.0	3.31e-01	94.8%	97.5%

D2 high residues 76-129

PDB

Domain cluster: representative