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NC_041911.1__YP_009598814.1__FDH28_gp121__00121

Bact-Vir

NC_041911.1__YP_009598814.1__FDH28_gp121__00121

Identity

Accession:
NC_041911 ↗
Kingdom:
phage

Quality

63.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-70
PDB
D2 medium residues 75-117
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t8vA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.69 59.0 3.51e-01 100.0% 13.6%
2eklA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 49.0 3.16e-01 76.7% 100.0%
1i1rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.67 55.0 3.74e-01 93.0% 98.8%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.67 53.0 3.78e-01 88.4% 57.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3846669 2004.1.1.17 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head 0.72 52.0 2.84e-01 76.7% 32.0%
2388480 109.4.1.241 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3458_C 0.70 59.0 3.54e-01 100.0% 13.5%
3601861 2011.2.1.0 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like 0.70 48.0 2.93e-01 72.1% 12.1%
3718216 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.68 49.0 3.46e-01 76.7% 90.4%
None 0.62 50.0 3.00e-01 97.7% 33.7%