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NC_041911.1__YP_009598868.1__FDH28_gp246__00175

Bact-Vir

NC_041911.1__YP_009598868.1__FDH28_gp246__00175

Identity

Accession:
NC_041911 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Ripduovirus› Ralstonia_phage_RP12

TaxID: 1923889

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ooqA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.77 55.0 3.36e-01 74.5% 14.8%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.76 55.0 5.07e-01 76.5% 67.2%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.75 54.0 4.99e-01 74.5% 67.2%
2kp8A00 1.20.5.170 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 53.0 4.70e-01 74.5% 63.9%
4cb8A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.75 62.0 3.54e-01 90.2% 20.9%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.75 54.0 4.95e-01 76.5% 81.8%
6ldkA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.74 56.0 3.81e-01 80.4% 25.6%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.74 53.0 4.36e-01 76.5% 51.1%
3hl1A02 6.10.140.1530 Special › Helix non-globular › Helix Hairpins › 0.74 52.0 4.81e-01 74.5% 73.8%
1d2mA03 6.10.140.240 Special › Helix non-globular › Helix Hairpins › 0.73 60.0 5.55e-01 92.2% 95.5%
2q5zB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.72 53.0 4.32e-01 78.4% 55.3%
3rlfF01 1.20.58.370 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like 0.71 56.0 4.71e-01 86.3% 66.3%
1wtyA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.71 57.0 4.37e-01 88.2% 74.1%
7pluA01 1.20.58.530 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 61.0 4.63e-01 94.1% 90.3%
3rklA00 6.10.140.1640 Special › Helix non-globular › Helix Hairpins › 0.70 51.0 4.42e-01 78.4% 56.2%
4hb1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.70 49.0 5.25e-01 74.5% 100.0%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.69 57.0 5.21e-01 94.1% 91.4%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.69 58.0 5.63e-01 96.1% 87.7%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.68 54.0 4.82e-01 86.3% 69.0%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.68 50.0 4.80e-01 78.4% 78.0%
5mmjo00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.68 50.0 4.47e-01 80.4% 61.3%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.68 57.0 4.29e-01 98.0% 40.4%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.68 51.0 4.93e-01 84.3% 80.0%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.67 53.0 4.88e-01 86.3% 70.8%
3fr3B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 48.0 3.75e-01 78.4% 39.1%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.66 46.0 4.77e-01 94.1% 77.1%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 51.0 4.81e-01 84.3% 79.0%
4lqqB00 1.20.140.30 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › MOB kinase activator 0.66 51.0 3.71e-01 86.3% 74.7%
1l3eB00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.65 44.0 3.60e-01 72.5% 40.6%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.64 52.0 4.25e-01 92.2% 48.0%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.64 50.0 4.27e-01 88.2% 53.9%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 46.0 4.39e-01 76.5% 72.6%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 50.0 4.37e-01 86.3% 59.0%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 53.0 4.70e-01 94.1% 67.1%
4ysxC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.62 51.0 3.70e-01 94.1% 34.0%
3cpgA00 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.62 56.0 3.54e-01 100.0% 32.0%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 50.0 3.88e-01 88.2% 53.6%
1cpyA02 1.10.287.410 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 44.0 4.02e-01 76.5% 61.1%
4m52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 49.0 3.34e-01 96.1% 37.4%
3nvaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 50.0 3.21e-01 100.0% 20.1%
6z01B03 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.60 49.0 3.52e-01 92.2% 69.5%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.58 49.0 4.13e-01 94.1% 84.9%
4q5qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 42.0 3.38e-01 82.4% 51.4%
2jbrA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.56 40.0 3.15e-01 78.4% 69.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4281883 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.83 75.0 5.40e-01 100.0% 51.1%
3991158 604.6.1.3 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › Hrs_helical 0.79 56.0 4.00e-01 74.5% 30.7%
3235389 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.77 52.0 3.63e-01 70.6% 25.8%
3405538 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.77 63.0 3.91e-01 94.1% 39.3%
3262083 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.77 55.0 4.30e-01 76.5% 41.0%
5004067 192.3.1.1 ↗ alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Sod_Fe_N 0.76 54.0 4.54e-01 74.5% 50.6%
3911783 604.6.1.3 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › Hrs_helical 0.75 57.0 4.46e-01 80.4% 44.8%
4653216 7514.1.1.1 ↗ a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 0.75 64.0 4.37e-01 98.0% 84.0%
3621115 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 59.0 3.48e-01 86.3% 11.1%
3599499 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.73 57.0 4.01e-01 82.4% 30.0%
4927007 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.73 54.0 5.33e-01 78.4% 85.5%
3410128 5041.1.1.0 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.72 53.0 4.89e-01 78.4% 78.5%
4176201 621.1.1.3 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB 0.72 62.0 5.04e-01 96.1% 69.5%
3958898 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.72 62.0 4.43e-01 100.0% 51.3%
3990688 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.72 63.0 5.17e-01 100.0% 58.9%
3587056 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.72 56.0 3.92e-01 84.3% 30.6%
3896730 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 58.0 4.21e-01 88.2% 76.3%
4951992 5041.1.1.55 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › DUF1622 0.71 55.0 4.38e-01 82.4% 67.0%
4635776 517.2.1.1 ↗ beta barrels › CBF-like › TraF › TraF › TrbI 0.70 51.0 3.30e-01 76.5% 19.5%
3944446 5069.1.3.1 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.70 60.0 5.14e-01 100.0% 72.9%
4200953 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 52.0 3.70e-01 82.4% 93.5%
4932329 610.3.1.0 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.68 57.0 4.04e-01 98.0% 30.3%
5056477 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.68 56.0 4.69e-01 94.1% 76.7%
3732977 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.67 58.0 3.30e-01 98.0% 75.8%
3686904 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.67 58.0 3.90e-01 98.0% 27.2%
3961347 150.5.1.53 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE 0.67 54.0 4.59e-01 88.2% 81.2%
3875375 192.7.1.36 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › PF28673 0.67 55.0 4.05e-01 96.1% 94.0%
3670388 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 56.0 4.10e-01 94.1% 37.0%
3608416 4336.2.1.0 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 0.65 54.0 4.52e-01 90.2% 64.7%
3916145 148.1.1.5 ↗ alpha arrays › Histone-like › Histone-related › Histone › TFIID-18kDa 0.65 56.0 3.68e-01 100.0% 25.4%
3504469 109.40.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › Ctf4_C 0.65 51.0 3.92e-01 84.3% 35.8%
3966542 2486.1.1.0 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.64 56.0 3.55e-01 98.0% 19.0%
3197548 3755.2.1.0 ↗ alpha bundles › YscO-like › Flagellar FliJ protein › Flagellar FliJ protein 0.64 51.0 3.62e-01 84.3% 33.3%
3699787 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.64 53.0 3.53e-01 100.0% 63.3%
3520924 206.1.1.88 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL, DUF1679 0.63 53.0 2.88e-01 100.0% 16.2%
4857531 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.62 48.0 3.69e-01 94.1% 38.2%
5015913 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.61 51.0 3.46e-01 100.0% 75.7%
4977812 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 47.0 3.14e-01 90.2% 41.0%
4994115 192.10.1.15 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › EamA 0.58 48.0 4.36e-01 94.1% 68.6%
3632143 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 43.0 3.29e-01 98.0% 74.2%
D2 medium residues 52-102
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3n2oA04 1.10.287.3440 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.79 56.0 5.62e-01 74.5% 76.9%
2lqxA00 6.10.250.1700 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 48.0 5.08e-01 72.5% 92.7%
2yguC00 1.10.238.190 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.69 53.0 4.10e-01 86.3% 47.5%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.68 58.0 5.32e-01 96.1% 82.1%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.66 57.0 4.64e-01 96.1% 78.7%
2z3tA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.66 54.0 3.24e-01 94.1% 67.3%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.65 56.0 4.96e-01 100.0% 80.8%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.63 43.0 4.03e-01 72.5% 64.2%
4c0eA01 1.25.40.790 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.61 43.0 2.72e-01 72.5% 19.4%
3b34A05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.61 41.0 2.53e-01 70.6% 19.7%
2pusA05 1.10.1740.80 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.61 47.0 4.13e-01 90.2% 55.0%
2ffjA01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.61 49.0 4.80e-01 94.1% 87.5%
2k0nA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.60 51.0 4.39e-01 100.0% 70.6%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.58 40.0 3.61e-01 76.5% 82.5%
3wvoC02 1.10.132.100 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.57 47.0 3.65e-01 100.0% 83.1%
2p6vA00 1.20.120.1110 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › TAFH/NHR1 domain 0.57 45.0 3.78e-01 92.2% 57.7%
6cgvM01 1.20.120.1500 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pre-hexon-linking protein IIIa 0.57 47.0 3.59e-01 100.0% 37.3%
1ym3A00 3.40.1050.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase 0.57 40.0 2.82e-01 78.4% 37.3%
3ne5B04 6.10.140.730 Special › Helix non-globular › Helix Hairpins › 0.57 36.0 3.67e-01 88.2% 64.7%
1fkaG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.56 46.0 3.59e-01 100.0% 75.0%
3deeA01 1.10.150.690 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 0.56 47.0 4.00e-01 96.1% 58.1%
1c3cA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.56 44.0 4.00e-01 100.0% 77.8%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.55 48.0 4.10e-01 100.0% 90.6%
2qz4A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 42.0 3.90e-01 90.2% 98.6%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 3.32e-01 96.1% 37.1%
1qrvA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.54 36.0 3.39e-01 84.3% 50.7%
1zv1A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 38.0 3.76e-01 88.2% 69.5%
1hu3A00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 38.0 2.64e-01 78.4% 23.0%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.53 42.0 3.77e-01 96.1% 82.9%
4nqwB00 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.53 37.0 3.38e-01 84.3% 52.1%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.53 39.0 4.04e-01 98.0% 89.6%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 43.0 3.45e-01 100.0% 83.9%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3634926 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.80 54.0 4.88e-01 70.6% 52.9%
3701812 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.71 61.0 4.78e-01 100.0% 94.8%
4995195 2488.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.66 60.0 3.81e-01 100.0% 22.1%
3424667 375.1.1.227 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › XH 0.66 58.0 4.71e-01 100.0% 80.0%
3230284 4022.1.1.1 ↗ a+b two layers › N-terminal a+b domain in urocanase (Pfam 01175) › N-terminal a+b domain in urocanase (Pfam 01175) › N-terminal a+b domain in urocanase (Pfam 01175) › Urocanase_N 0.65 55.0 3.68e-01 100.0% 77.6%
4962121 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.64 53.0 4.65e-01 100.0% 100.0%
3641165 592.6.1.3 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › DExH14_plug 0.64 54.0 4.31e-01 100.0% 71.8%
5048820 2488.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.64 57.0 3.57e-01 100.0% 20.4%
3219940 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.63 52.0 5.13e-01 96.1% 94.5%
3185258 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.60 50.0 4.27e-01 100.0% 62.2%
3705705 103.4.1.2 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M 0.60 47.0 3.77e-01 92.2% 73.0%
3704822 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 47.0 3.43e-01 92.2% 51.5%
3728568 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.60 48.0 4.66e-01 96.1% 90.0%
3615313 1128.1.1.2 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.59 49.0 4.34e-01 98.0% 71.2%
3595956 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.59 50.0 4.21e-01 96.1% 66.7%
3925923 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.59 51.0 4.64e-01 100.0% 84.3%
3311542 138.1.1.11 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › RFC_C 0.59 44.0 4.21e-01 80.4% 78.3%
3744484 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.59 46.0 4.17e-01 96.1% 72.5%
3201310 145.1.1.1 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.58 38.0 3.72e-01 70.6% 58.3%
3734404 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.58 49.0 4.28e-01 96.1% 76.2%
5011282 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.58 47.0 2.92e-01 100.0% 34.4%
4012664 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.57 47.0 3.89e-01 96.1% 55.0%
4494528 632.2.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › DUF515 0.57 45.0 4.50e-01 94.1% 90.9%
3471670 611.3.1.1 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.56 38.0 3.40e-01 80.4% 48.0%
3533312 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.56 46.0 4.12e-01 96.1% 75.6%
3413026 103.4.1.3 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N 0.56 44.0 4.13e-01 94.1% 75.7%
4982080 4126.1.1.1 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.56 38.0 2.68e-01 72.5% 48.4%
3254755 193.1.1.0 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like 0.56 44.0 3.29e-01 88.2% 33.8%
3258290 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.55 45.0 4.12e-01 100.0% 81.3%
3250261 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.55 44.0 3.86e-01 98.0% 64.4%
3673391 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.55 45.0 3.99e-01 98.0% 72.5%
3591850 4030.1.1.0 ↗ alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.55 37.0 3.49e-01 70.6% 60.0%
3738479 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.55 45.0 3.89e-01 96.1% 67.1%
3714356 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.54 44.0 3.88e-01 98.0% 68.2%
3483040 1128.1.1.11 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Microp_apicomplexa_7 0.54 46.0 3.88e-01 98.0% 66.7%
3587523 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.54 46.0 3.75e-01 98.0% 61.0%
3638639 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.53 44.0 3.68e-01 100.0% 86.0%
3516166 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.53 43.0 3.68e-01 100.0% 57.9%
3482665 611.3.1.0 ↗ alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 0.53 37.0 3.22e-01 78.4% 45.9%
3538309 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.53 42.0 3.83e-01 100.0% 73.8%
1933282 4126.1.1.3 ↗ a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › LCIB_C_CA 0.53 37.0 2.51e-01 80.4% 30.3%
3264889 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.52 43.0 3.75e-01 98.0% 72.9%
5060248 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.52 42.0 3.92e-01 98.0% 82.9%
3970563 5050.1.1.32 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.51 42.0 2.95e-01 94.1% 70.5%
4946174 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.60e-01 100.0% 57.8%
3492342 2007.2.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.50 39.0 2.69e-01 90.2% 23.7%