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NC_041911.1__YP_009598876.1__FDH28_gp238__00183

Bact-Vir

Identity

Accession:: NC_041911 ↗
Kingdom:: phage

Quality

56.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Ripduovirus› Ralstonia_phage_RP12

TaxID: 1923889

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-130

PDB

D2 high residues 197-206_229-285

PDB

D3 medium residues 131-192_207-228

PDB

Domain cluster: rep: NC_042028.1__YP_009613803.1__FDI57_gp38__00038__D8-94

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4i9oA00	1.10.246.20	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain	0.71	41.0	4.23e-01	89.3%	60.3%
6xzqA01	3.40.91.90	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain	0.63	37.0	2.99e-01	100.0%	30.2%
1u61A00	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.57	47.0	4.16e-01	91.7%	67.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4198408	5054.1.1.7 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › KdpA	0.65	46.0	3.86e-01	73.8%	67.9%
3407116	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.63	46.0	3.94e-01	76.2%	84.4%
3268337	7087.1.1.1 ↗	alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › EBP	0.60	52.0	3.98e-01	100.0%	65.1%
3735962	130.1.2.0 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38	0.59	44.0	3.37e-01	81.0%	79.9%
4417845	109.4.1.909 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DOP1_C	0.57	47.0	3.29e-01	94.0%	84.7%
3303885	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.54	48.0	4.32e-01	96.4%	91.2%
3217487	5001.1.1.27 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Sre	0.54	47.0	3.21e-01	100.0%	44.8%
3644932	5069.1.3.62 ↗	alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Mito_carr	0.53	47.0	4.14e-01	100.0%	73.6%