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NC_041911.1__YP_009598890.1__FDH28_gp224__00197

Bact-Vir

Identity

Accession:: NC_041911 ↗
Kingdom:: phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Ripduovirus› Ralstonia_phage_RP12

TaxID: 1923889

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3p2aA01	2.30.30.380	Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24	0.75	45.0	5.27e-01	98.2%	94.4%
3ja8204	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	40.0	2.50e-01	80.4%	74.1%
5ffiE00	3.10.20.30	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain	0.54	34.0	2.85e-01	98.2%	34.3%
4harA00	3.10.50.50	Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein	0.53	38.0	3.26e-01	78.6%	98.0%
5c6dA01	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.52	35.0	2.95e-01	85.7%	37.4%
3akjA02	1.10.1070.20	Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 ›	0.50	37.0	2.65e-01	83.9%	39.3%

ECOD (13)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5068970	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.83	50.0	5.84e-01	98.2%	89.5%
5039298	386.1.1.0 ↗	few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers	0.81	50.0	6.01e-01	98.2%	100.0%
2793102	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.74	44.0	5.28e-01	98.2%	100.0%
3352340	375.1.1.210 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF30904	0.69	50.0	5.05e-01	100.0%	78.2%
4995785	221.3.1.0 ↗	a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains	0.68	46.0	4.66e-01	100.0%	70.9%
3801584	221.1.1.6 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA	0.68	46.0	3.76e-01	83.9%	39.0%
3179152	375.1.1.25 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Tfb4	0.58	40.0	3.77e-01	94.6%	61.5%
3715542	2484.3.1.2 ↗	mixed a+b and a/b › Ribonuclease H-like › Creatinase/prolidase N-terminal domain › Creatinase/prolidase N-terminal domain › AMP_N	0.57	41.0	3.00e-01	78.6%	84.7%
3980575	3071.1.1.0 ↗	a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins	0.57	38.0	3.62e-01	71.4%	74.3%
4929843	4123.1.1.0 ↗	few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like	0.55	42.0	4.39e-01	96.4%	96.0%
4530224	4987.1.1.1 ↗	few secondary structure elements › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal_L31	0.52	33.0	3.65e-01	100.0%	82.2%
4241869	221.1.1.21 ↗	a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ub-RnfH	0.51	34.0	3.15e-01	100.0%	52.0%
4669573	4987.1.1.1 ↗	few secondary structure elements › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal protein L31p › Ribosomal_L31	0.50	31.0	3.05e-01	96.4%	53.8%

D2 high residues 73-116

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2lrrA00	3.30.1370.50	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain	0.53	38.0	3.35e-01	75.0%	54.3%
2ia7A00	3.10.450.40	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, ›	0.51	38.0	3.11e-01	97.7%	57.7%