←Back to structures
NC_041911.1__YP_009598942.1__FDH28_gp172__00249
Bact-VirNC_041911.1__YP_009598942.1__FDH28_gp172__00249
Identity
- Accession:
- NC_041911 ↗
- Kingdom:
- phage
Quality
89.2
mean pLDDT
Taxonomy
TaxID: 1923889
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-147
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.66 | 40.0 | 4.55e-01 | 81.4% | 79.4% |
| 1e6vA03 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.60 | 48.0 | 3.91e-01 | 83.7% | 70.4% |
| 4wk5A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 43.0 | 3.47e-01 | 78.3% | 86.7% |
| 1pw4A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.56 | 42.0 | 3.56e-01 | 79.1% | 53.8% |
| 1v4eA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.56 | 41.0 | 3.27e-01 | 78.3% | 89.3% |
| 3p5nA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.54 | 46.0 | 4.21e-01 | 91.5% | 77.4% |
| 3ctvA00 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.54 | 31.0 | 3.56e-01 | 92.2% | 77.2% |
| 6cnzF00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.53 | 41.0 | 3.85e-01 | 82.2% | 99.4% |
| 5jajA03 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.52 | 36.0 | 3.78e-01 | 79.1% | 76.7% |
| 5b57B00 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.52 | 38.0 | 2.90e-01 | 77.5% | 90.2% |
| 1e7pC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.51 | 42.0 | 3.42e-01 | 89.1% | 62.2% |
| 2cfoA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.51 | 36.0 | 3.89e-01 | 89.9% | 89.4% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4377288 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.63 | 50.0 | 3.42e-01 | 86.0% | 77.9% |
| 3590088 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.60 | 51.0 | 4.12e-01 | 89.9% | 62.2% |
| 5022794 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 39.0 | 4.55e-01 | 97.7% | 95.6% |
| 3897163 | 109.4.1.88 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MUN | 0.58 | 43.0 | 3.55e-01 | 76.7% | 59.6% |
| 4955610 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.57 | 48.0 | 4.08e-01 | 89.9% | 63.3% |
| 4973961 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 34.0 | 3.79e-01 | 81.4% | 76.8% |
| 395385 | 109.23.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 | 0.56 | 41.0 | 4.04e-01 | 76.0% | 87.2% |
| 3613918 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.56 | 48.0 | 4.50e-01 | 94.6% | 91.3% |
| 4991414 | 5051.1.1.0 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like | 0.56 | 49.0 | 3.45e-01 | 100.0% | 80.0% |
| 3979217 | 3576.1.1.1 ↗ | a+b complex topology › Cas8-like › Cascade subunit CasA/Cse1/Cas8 › Cascade subunit CasA/Cse1/Cas8 › CRISPR_Cse1 | 0.55 | 37.0 | 2.44e-01 | 100.0% | 17.1% |
| 3700052 | 5050.1.1.4 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nucleoside_tran | 0.54 | 40.0 | 4.21e-01 | 78.3% | 94.2% |
| 3240652 | 109.4.1.643 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG2_C | 0.53 | 39.0 | 2.52e-01 | 76.0% | 25.2% |
| 4991159 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.53 | 42.0 | 3.93e-01 | 85.3% | 96.9% |
| 4992707 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.61e-01 | 70.5% | 84.3% |
| 3246354 | 109.4.1.88 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MUN | 0.53 | 40.0 | 2.62e-01 | 79.8% | 21.6% |
| 3976308 | 5065.1.1.2 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD | 0.53 | 42.0 | 3.17e-01 | 87.6% | 72.9% |
| 3228201 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 40.0 | 3.58e-01 | 81.4% | 57.3% |
| 3967052 | 164.1.1.1 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II › CM_2 | 0.52 | 39.0 | 3.73e-01 | 79.8% | 97.4% |
| 3442783 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.51 | 32.0 | 3.42e-01 | 82.2% | 71.8% |
| 4374823 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.51 | 42.0 | 3.30e-01 | 88.4% | 93.9% |
| 4957509 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.50 | 45.0 | 3.53e-01 | 100.0% | 89.8% |
| 5073173 | 3542.1.1.0 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases | 0.50 | 40.0 | 3.13e-01 | 86.0% | 86.9% |