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NC_041916.1__YP_009599317.1__FDH33_gp030__00030

Bact-Vir

NC_041916.1__YP_009599317.1__FDH33_gp030__00030

Identity

Accession:
NC_041916 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Tidunavirus› Vibrio_phage_pTD1

TaxID: 1938577

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-157
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23474.2 best Acb1 46.8 3.60e-12 98.6% 82.8%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h7wA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.79 73.0 6.65e-01 100.0% 91.4%
1jh6A00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.76 71.0 6.54e-01 100.0% 82.9%
4qakA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.74 69.0 6.46e-01 100.0% 85.4%
2d4gA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.71 66.0 6.23e-01 100.0% 88.6%
6bq9A02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 28.0 3.38e-01 89.5% 66.0%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 30.0 3.55e-01 92.3% 68.7%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 32.0 3.55e-01 71.3% 68.1%
5fiiB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 28.0 3.56e-01 91.6% 84.6%
1lk5A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 27.0 3.45e-01 87.4% 81.0%
1xtzA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 27.0 3.28e-01 86.7% 78.6%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.51 42.0 4.30e-01 100.0% 91.5%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3955687 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.79 73.0 6.98e-01 100.0% 93.9%
4946449 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.78 72.0 6.59e-01 100.0% 87.0%
4972305 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.77 72.0 6.65e-01 100.0% 86.5%
5026546 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.77 72.0 6.61e-01 100.0% 88.3%
4972958 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.77 72.0 6.54e-01 100.0% 87.5%
None — 0.77 72.0 6.68e-01 100.0% 88.6%
4937535 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.77 71.0 6.63e-01 100.0% 88.6%
5042461 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.77 71.0 6.45e-01 100.0% 86.7%
4956981 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.76 71.0 6.49e-01 100.0% 86.5%
5000045 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.76 71.0 6.50e-01 100.0% 85.9%
276 264.1.1.4 ↗ beta barrels › LigT-like › LigT-related › LigT-related › CPDase 0.76 71.0 6.54e-01 100.0% 82.9%
3738455 264.1.1.7 ↗ beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.76 71.0 6.34e-01 100.0% 88.2%
4948034 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.76 71.0 6.48e-01 100.0% 85.9%
None — 0.76 71.0 6.46e-01 100.0% 87.0%
4952280 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.76 71.0 6.51e-01 100.0% 88.9%
4020982 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.75 70.0 5.65e-01 100.0% 69.3%
5039548 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.75 70.0 6.47e-01 100.0% 86.6%
3338135 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.75 70.0 6.44e-01 100.0% 83.3%
5029239 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.75 70.0 6.44e-01 100.0% 87.1%
4967857 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.75 68.0 6.29e-01 97.9% 87.8%
5061864 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.75 69.0 6.28e-01 99.3% 84.9%
5028063 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.75 70.0 6.47e-01 100.0% 85.7%
4942504 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.75 69.0 6.33e-01 100.0% 87.4%
5047137 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.75 69.0 6.31e-01 100.0% 86.5%
5010662 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.74 69.0 6.33e-01 100.0% 85.9%
4965442 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.73 68.0 6.56e-01 100.0% 93.1%
5063905 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.73 68.0 6.43e-01 100.0% 86.4%
5062926 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.73 67.0 6.36e-01 100.0% 84.8%
5058094 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.73 68.0 6.32e-01 100.0% 88.0%
4957217 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.73 68.0 6.26e-01 100.0% 86.7%
None — 0.73 65.0 6.11e-01 95.8% 88.8%
4979619 264.1.1.1 ↗ beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase 0.72 63.0 5.98e-01 93.7% 88.8%
4046553 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.72 67.0 6.29e-01 100.0% 87.1%
3690734 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.71 65.0 6.23e-01 100.0% 89.7%
4991838 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.70 55.0 5.70e-01 83.2% 88.0%
5039231 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.64 26.0 3.78e-01 88.8% 81.5%
426155 2.24.1.1 ↗ beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 0.58 27.0 3.63e-01 96.5% 85.9%
3742864 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 26.0 2.93e-01 91.6% 55.5%
1518821 304.7.1.8 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › ORF_2_N 0.53 22.0 2.35e-01 89.5% 37.7%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.52 34.0 3.66e-01 72.0% 76.8%
1406655 2.1.1.65 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_OB_2 0.51 26.0 3.21e-01 95.8% 80.2%