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NC_041917.1__YP_009599612.1__FDH34_gp116__00116
Bact-VirNC_041917.1__YP_009599612.1__FDH34_gp116__00116
Identity
- Accession:
- NC_041917 ↗
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Taxonomy
TaxID: 1962671
Cluster
View cluster (22 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-153
Domain cluster:
rep: ON287372.1__UQT02932.1__TOTORO_00690__00069__D17-122
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1at3A00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.71 | 63.0 | 5.25e-01 | 100.0% | 58.1% |
| 1o6eA00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.70 | 65.0 | 5.42e-01 | 100.0% | 64.4% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.68 | 30.0 | 3.92e-01 | 85.9% | 73.3% |
| 1cmvB00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.67 | 59.0 | 5.05e-01 | 100.0% | 60.7% |
| 2dyiA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.58 | 32.0 | 4.21e-01 | 76.3% | 100.0% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.56 | 31.0 | 3.46e-01 | 97.0% | 66.7% |
| 1k8rB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 29.0 | 3.54e-01 | 70.4% | 82.9% |
| 2l3rA02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 28.0 | 3.60e-01 | 70.4% | 90.4% |
| 8a9xA01 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.53 | 25.0 | 3.18e-01 | 100.0% | 76.0% |
| 1przA01 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.52 | 34.0 | 3.05e-01 | 100.0% | 45.1% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995675 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.93 | 83.0 | 7.63e-01 | 91.9% | 80.6% |
| 3585229 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.92 | 87.0 | 8.57e-01 | 97.8% | 95.7% |
| 1933303 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.92 | 81.0 | 7.41e-01 | 91.1% | 78.3% |
| 3964948 | 1.1.16.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 | 0.83 | 68.0 | 7.09e-01 | 97.8% | 92.8% |
| 5003309 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.80 | 70.0 | 7.15e-01 | 97.0% | 95.4% |
| 5083161 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.80 | 68.0 | 6.62e-01 | 88.9% | 82.8% |
| 5004197 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.79 | 53.0 | 6.14e-01 | 72.6% | 93.0% |
| 3954964 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.77 | 72.0 | 7.08e-01 | 100.0% | 93.1% |
| 4960055 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.77 | 70.0 | 6.97e-01 | 96.3% | 97.1% |
| 3166306 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.77 | 70.0 | 6.75e-01 | 97.8% | 93.5% |
| 5083920 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.74 | 66.0 | 6.55e-01 | 93.3% | 96.4% |
| 4032431 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.72 | 62.0 | 5.95e-01 | 91.9% | 83.2% |
| 1304358 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.69 | 64.0 | 5.34e-01 | 100.0% | 60.4% |
| 2771876 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.68 | 34.0 | 3.74e-01 | 83.0% | 56.6% |
| 3959311 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.66 | 41.0 | 4.73e-01 | 100.0% | 87.4% |
| 1150480 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.63 | 43.0 | 4.87e-01 | 71.9% | 91.3% |
| 3961250 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.60 | 36.0 | 4.40e-01 | 81.5% | 95.3% |
| 3838338 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.58 | 36.0 | 4.37e-01 | 83.0% | 97.6% |
| 3347366 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.57 | 39.0 | 4.25e-01 | 100.0% | 83.5% |
| 3982061 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.56 | 41.0 | 4.28e-01 | 97.8% | 82.4% |
| 4937870 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.55 | 32.0 | 3.72e-01 | 100.0% | 81.1% |
| 4319410 | 304.15.1.7 ↗ | a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › DUF5609 | 0.53 | 33.0 | 4.00e-01 | 85.9% | 98.8% |
| 5082425 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.52 | 32.0 | 3.65e-01 | 100.0% | 83.0% |
| 5044372 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.52 | 32.0 | 3.53e-01 | 100.0% | 75.5% |
| 5040415 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.52 | 33.0 | 3.64e-01 | 100.0% | 81.0% |
| 5072539 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.51 | 31.0 | 3.36e-01 | 100.0% | 69.6% |
| 4990211 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.51 | 34.0 | 3.83e-01 | 97.8% | 90.0% |