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NC_041917.1__YP_009599666.1__FDH34_gp170__00170
Bact-VirNC_041917.1__YP_009599666.1__FDH34_gp170__00170
Identity
- Accession:
- NC_041917 ↗
- Kingdom:
- phage
Quality
68.9
mean pLDDT
Taxonomy
TaxID: 1962671
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-73
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2byvE03 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.69 | 54.0 | 4.03e-01 | 85.5% | 69.8% |
| 3cf6E01 | 1.10.8.1240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 43.0 | 5.09e-01 | 72.5% | 100.0% |
| 2wviA00 | 1.25.40.430 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 44.0 | 3.38e-01 | 79.7% | 31.9% |
| 1pujA02 | 1.10.1580.10 | Mainly Alpha › Orthogonal Bundle › Conserved Hypothetical Protein Ylqf; Chain: A; domain 2 › | 0.62 | 46.0 | 4.26e-01 | 81.2% | 97.8% |
| 1tjcA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.60 | 41.0 | 3.77e-01 | 72.5% | 61.1% |
| 2zs0A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 44.0 | 3.55e-01 | 87.0% | 85.0% |
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.56 | 42.0 | 4.07e-01 | 81.2% | 82.1% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.54 | 37.0 | 3.64e-01 | 89.9% | 63.6% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 43.0 | 3.48e-01 | 89.9% | 84.0% |
| 4qiwB04 | 3.90.1110.10 | Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 | 0.52 | 42.0 | 3.35e-01 | 95.7% | 82.8% |
| 1wrdA00 | 1.20.58.160 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 39.0 | 3.49e-01 | 82.6% | 84.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3719483 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.71 | 56.0 | 4.27e-01 | 87.0% | 80.6% |
| 3581518 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.70 | 55.0 | 4.33e-01 | 85.5% | 80.0% |
| 3997378 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.69 | 50.0 | 4.10e-01 | 78.3% | 85.4% |
| 3492162 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.69 | 53.0 | 4.19e-01 | 85.5% | 82.0% |
| 3916871 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.67 | 52.0 | 4.13e-01 | 85.5% | 84.8% |
| 3226649 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.67 | 52.0 | 3.77e-01 | 85.5% | 63.0% |
| 3989272 | 633.2.1.1 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun | 0.58 | 43.0 | 4.03e-01 | 81.2% | 74.4% |
| 3261857 | 101.21.1.2 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd | 0.57 | 41.0 | 4.22e-01 | 91.3% | 80.0% |
| 5055834 | 3009.2.1.0 ↗ | alpha arrays › Insertion subdomain in DsbA-like › STAC domain › STAC domain | 0.56 | 45.0 | 4.35e-01 | 87.0% | 77.5% |
| 4946290 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 40.0 | 4.16e-01 | 92.8% | 81.5% |
| 4930612 | 4009.1.1.4 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › DUF3243 | 0.55 | 45.0 | 4.40e-01 | 97.1% | 96.2% |
| 3677678 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 41.0 | 2.90e-01 | 81.2% | 61.9% |
| 3898191 | 109.4.1.1705 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26106 | 0.53 | 43.0 | 2.59e-01 | 88.4% | 24.0% |
| 3935192 | 102.5.1.0 ↗ | alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins | 0.53 | 44.0 | 4.30e-01 | 95.7% | 84.0% |
| 3245687 | 226.1.1.1 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB | 0.52 | 39.0 | 3.52e-01 | 84.1% | 66.7% |
| 3715346 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 41.0 | 2.97e-01 | 94.2% | 49.8% |
| 3250201 | 101.1.1.21 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 | 0.51 | 39.0 | 4.04e-01 | 94.2% | 89.2% |
| 3533067 | 101.1.2.352 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 | 0.50 | 38.0 | 3.78e-01 | 95.7% | 80.0% |