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NC_041917.1__YP_009599889.1__FDH34_gp527__00393

Bact-Vir

NC_041917.1__YP_009599889.1__FDH34_gp527__00393

Identity

Accession:
NC_041917 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eneladusvirus› Serratia_phage_BF

TaxID: 1962671

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-72
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.67 55.0 4.46e-01 94.3% 78.7%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.67 55.0 4.67e-01 95.7% 87.1%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.64 40.0 4.18e-01 81.4% 69.4%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 53.0 4.50e-01 94.3% 96.8%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.64 52.0 3.89e-01 91.4% 70.7%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 53.0 4.90e-01 95.7% 98.9%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 52.0 4.42e-01 95.7% 76.6%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.60 40.0 2.68e-01 84.3% 16.6%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.58 37.0 3.26e-01 80.0% 40.7%
3ef2A02 3.30.460.70 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.58 45.0 3.69e-01 87.1% 76.8%
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 39.0 3.53e-01 98.6% 51.6%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 43.0 2.93e-01 87.1% 91.1%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 40.0 3.39e-01 85.7% 45.6%
1vhoA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 41.0 4.01e-01 77.1% 76.6%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.56 39.0 3.42e-01 92.9% 48.6%
4r8tB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 45.0 4.52e-01 98.6% 87.7%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 39.0 3.32e-01 85.7% 44.1%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.56 36.0 4.06e-01 81.4% 95.8%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.55 40.0 4.25e-01 77.1% 100.0%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 42.0 3.03e-01 85.7% 84.3%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 45.0 3.71e-01 97.1% 72.7%
1hxdA03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 33.0 3.88e-01 80.0% 100.0%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 39.0 3.51e-01 80.0% 69.4%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 38.0 2.89e-01 75.7% 37.7%
1qxmA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.61e-01 97.1% 74.5%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 44.0 3.60e-01 97.1% 72.7%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.53 39.0 3.35e-01 84.3% 49.5%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 44.0 3.86e-01 97.1% 89.2%
2wyrB02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.52 40.0 3.74e-01 81.4% 68.2%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 40.0 3.68e-01 85.7% 64.9%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 36.0 2.74e-01 74.3% 34.5%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.51 36.0 3.45e-01 85.7% 62.5%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.51 38.0 3.63e-01 87.1% 98.9%
5hpzA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 42.0 3.25e-01 97.1% 74.9%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 38.0 2.57e-01 85.7% 82.6%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 39.0 2.66e-01 88.6% 98.7%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.50 40.0 3.57e-01 88.6% 83.2%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3404980 7579.1.1.89 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, BD-FAE 0.68 50.0 2.95e-01 78.6% 32.7%
3391186 7579.1.1.101 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase, Abhydrolase_3, BD-FAE 0.68 50.0 2.94e-01 78.6% 32.9%
3693093 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 56.0 4.66e-01 92.9% 87.2%
3723092 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.67 55.0 4.65e-01 92.9% 91.7%
4029057 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 53.0 4.74e-01 91.4% 100.0%
3919968 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 54.0 4.51e-01 92.9% 84.8%
4028811 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.64 54.0 4.68e-01 97.1% 87.0%
3740262 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.46e-01 95.7% 82.3%
4001363 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 53.0 4.30e-01 92.9% 98.5%
3928361 220.1.1.46 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.64 52.0 4.23e-01 92.9% 87.9%
1283866 220.1.1.51 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.63 52.0 4.42e-01 95.7% 76.6%
4993029 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.62 50.0 3.92e-01 88.6% 77.3%
3622643 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.62 44.0 4.17e-01 85.7% 62.4%
4680376 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.62 38.0 4.22e-01 80.0% 80.0%
3991244 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.62 39.0 4.47e-01 75.7% 100.0%
3992564 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.34e-01 100.0% 75.0%
3935202 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.62 52.0 4.42e-01 97.1% 90.8%
4023915 220.1.1.53 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.61 51.0 4.42e-01 95.7% 89.6%
3243986 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.61 51.0 4.53e-01 97.1% 96.2%
3479370 220.1.1.94 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CLEC16A_C 0.60 51.0 4.05e-01 100.0% 78.8%
3587958 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 4.55e-01 95.7% 100.0%
3164374 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.59 39.0 4.31e-01 81.4% 94.0%
1405101 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.58 37.0 4.21e-01 82.9% 92.0%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.58 44.0 3.95e-01 82.9% 95.0%
4607208 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.58 38.0 3.26e-01 82.9% 39.0%
3964422 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 44.0 3.43e-01 84.3% 88.7%
4245466 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.56 36.0 4.01e-01 82.9% 92.0%
3248299 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.55 45.0 2.75e-01 97.1% 13.1%
3210512 220.1.1.214 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_C 0.55 46.0 4.03e-01 98.6% 99.1%
3325360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.96e-01 82.9% 78.3%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.54 41.0 4.12e-01 85.7% 98.7%
3625965 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 38.0 3.49e-01 85.7% 54.7%
3213040 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.60e-01 78.6% 77.5%
4795566 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 37.0 3.81e-01 77.1% 91.0%
3182114 6148.1.1.0 ↗ few secondary structure elements › N-terminal domain of EpCAM › N-terminal domain of EpCAM › N-terminal domain of EpCAM 0.52 41.0 3.36e-01 85.7% 92.3%
3744032 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.52 42.0 3.37e-01 91.4% 73.8%
3429682 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 41.0 4.10e-01 92.9% 94.7%
3880439 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 39.0 2.40e-01 87.1% 88.0%
4011568 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.50 38.0 2.57e-01 87.1% 98.5%
3432877 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.95e-01 85.7% 93.8%