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NC_041917.1__YP_009600015.1__FDH34_gp401__00519

Bact-Vir

NC_041917.1__YP_009600015.1__FDH34_gp401__00519

Identity

Accession:
NC_041917 ↗
Kingdom:
phage

Quality

88.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Eneladusvirus› Serratia_phage_BF

TaxID: 1962671

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 187-260
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5x8tT00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.57 43.0 3.56e-01 86.5% 43.1%
2h56A02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.57 44.0 3.85e-01 85.1% 81.6%
2kilA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.55 45.0 3.49e-01 93.2% 84.5%
1ij5A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 41.0 3.46e-01 82.4% 48.1%
3buxB02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 38.0 3.67e-01 78.4% 69.7%
4anjA06 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 40.0 3.51e-01 82.4% 59.3%
5vt9B01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 39.0 3.98e-01 87.8% 83.6%
6k9nA01 3.30.200.60 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Peptidase C65 Otubain, subdomain 1 0.52 42.0 4.05e-01 91.9% 93.3%
1xgsA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.62e-01 90.5% 72.7%
4ol8B03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 41.0 3.94e-01 98.6% 76.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3492060 108.1.1.97 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 0.59 50.0 4.91e-01 100.0% 87.5%
3583564 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.59 38.0 3.92e-01 100.0% 70.0%
3481559 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.59 39.0 4.21e-01 75.7% 86.7%
3872908 108.1.1.12 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › p25-alpha 0.58 50.0 4.47e-01 95.9% 91.4%
3742315 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.58 48.0 4.35e-01 98.6% 88.2%
4460243 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.57 39.0 4.35e-01 78.4% 94.5%
3606932 108.1.1.123 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_EFHB_C 0.57 39.0 3.98e-01 81.1% 73.3%
3291695 4019.1.1.6 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 0.56 45.0 3.73e-01 97.3% 47.9%
4401871 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.56 39.0 4.38e-01 83.8% 98.2%
5080761 103.12.1.14 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › DUF2240 0.56 37.0 3.95e-01 82.4% 79.7%
4127906 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.56 39.0 4.31e-01 90.5% 100.0%
4516320 3949.1.1.1 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.55 35.0 3.49e-01 98.6% 62.7%
3729235 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.55 39.0 4.21e-01 94.6% 96.7%
3532620 108.1.1.66 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_PLCG1 0.54 40.0 3.79e-01 82.4% 71.6%
5001389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 4.13e-01 98.6% 98.0%
3173423 108.1.1.25 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4 0.53 40.0 3.81e-01 87.8% 68.9%
3789538 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.53 41.0 3.94e-01 85.1% 84.7%
3527040 219.1.1.94 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › ACTMAP-like_C 0.52 41.0 2.94e-01 90.5% 31.8%
3224178 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 40.0 3.85e-01 87.8% 83.3%
3592099 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 37.0 3.94e-01 78.4% 89.2%
4317824 108.2.1.0 ↗ alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins 0.52 41.0 3.74e-01 93.2% 82.7%
3323715 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.52 38.0 3.95e-01 82.4% 92.9%
3407435 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.51 37.0 3.30e-01 77.0% 68.2%
3875473 108.1.1.38 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_Zip 0.51 40.0 3.92e-01 87.8% 83.7%
4183912 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.51 38.0 3.80e-01 93.2% 81.3%
D2 medium residues 1-100
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 52.0 4.02e-01 100.0% 93.7%
6fdpA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 47.0 4.53e-01 93.0% 95.0%
1a17A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 48.0 4.17e-01 94.0% 75.5%
3lvyE01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.56 36.0 3.07e-01 74.0% 39.4%
7yb9A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 49.0 3.91e-01 100.0% 51.8%
3urzA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.56 46.0 3.82e-01 96.0% 63.9%
4kvmA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 46.0 3.00e-01 94.0% 22.9%
3sz7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 46.0 4.07e-01 94.0% 77.5%
1elwA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.55 45.0 4.35e-01 94.0% 98.3%
2pl2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 45.0 3.68e-01 92.0% 66.0%
4gywA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 42.0 4.19e-01 86.0% 97.1%
3as5A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 46.0 3.94e-01 100.0% 62.4%
6i57A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 44.0 4.18e-01 94.0% 96.0%
4nrhB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 44.0 3.83e-01 97.0% 87.1%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245338 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.58 49.0 4.52e-01 93.0% 96.2%
436032 109.4.1.191 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7 0.57 48.0 3.91e-01 96.0% 62.1%
3715402 109.4.1.210 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 0.57 49.0 4.43e-01 100.0% 83.4%
3404366 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.56 48.0 4.40e-01 98.0% 85.7%
3596379 109.4.1.1649 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_19 0.56 49.0 4.15e-01 100.0% 69.1%
4508403 109.4.1.190 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6 0.54 46.0 3.98e-01 100.0% 90.9%
5044568 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 41.0 3.64e-01 85.0% 62.5%
3677739 7552.1.1.1 ↗ a/b three-layered sandwiches › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase signature (AS) enzymes › Amidase 0.53 41.0 2.88e-01 86.0% 92.5%
3597830 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.53 42.0 4.07e-01 92.0% 94.2%
3604420 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 41.0 3.04e-01 88.0% 51.2%
5078105 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.50 42.0 4.01e-01 94.0% 84.2%
D3 medium residues 101-175
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3b34A05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.58 46.0 3.15e-01 93.3% 52.3%
1a7eA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.52 35.0 3.08e-01 94.7% 44.9%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 43.0 3.32e-01 97.3% 74.2%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.51 36.0 3.58e-01 76.0% 81.0%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.51 35.0 3.14e-01 97.3% 49.5%
2o36A01 1.20.1050.40 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › Endopeptidase. Chain P; domain 1 0.51 37.0 3.10e-01 77.3% 67.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3729368 109.3.1.177 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Clathrin 0.68 56.0 4.36e-01 90.7% 61.2%
4667100 109.4.1.12 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Clathrin 0.66 56.0 4.27e-01 94.7% 57.7%
3812592 109.4.1.1948 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle 0.59 45.0 3.63e-01 84.0% 75.6%
3435714 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 52.0 4.42e-01 100.0% 72.0%
4927190 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 42.0 3.45e-01 78.7% 67.3%
5001327 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.51 35.0 3.35e-01 72.0% 62.2%