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NC_041918.2__YP_009600070.1__MUK65_gp25__00025

Bact-Vir

NC_041918.2__YP_009600070.1__MUK65_gp25__00025

Identity

Accession:
NC_041918 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saundersvirus› Geobacillus_phage_TP-84

TaxID: 1965361

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 114-292
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x8kA03 2.60.120.860 Mainly Beta › Sandwich › Jelly Rolls › 0.83 51.0 6.44e-01 98.9% 98.2%
5v00B01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 28.0 3.95e-01 100.0% 81.7%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 29.0 4.06e-01 100.0% 86.2%
8hhvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.64 38.0 4.54e-01 97.8% 86.9%
3lwcA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 29.0 3.65e-01 100.0% 69.9%
3am2A02 2.60.120.1050 Mainly Beta › Sandwich › Jelly Rolls › 0.62 36.0 4.29e-01 100.0% 84.6%
2id4A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 42.0 4.69e-01 100.0% 88.4%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 29.0 3.48e-01 100.0% 64.9%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 36.0 4.52e-01 100.0% 93.7%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.61 31.0 3.33e-01 99.4% 54.7%
3kq4B02 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.60 37.0 4.41e-01 100.0% 91.5%
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.60 33.0 4.09e-01 100.0% 85.6%
5hbaA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.60 41.0 4.76e-01 100.0% 94.7%
4oq8A00 2.60.120.220 Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain 0.59 38.0 4.24e-01 100.0% 80.6%
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.59 39.0 4.54e-01 100.0% 93.0%
3rykA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 32.0 3.24e-01 100.0% 52.0%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 36.0 4.32e-01 99.4% 90.8%
4lr4A02 2.60.120.1430 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 4.34e-01 100.0% 78.0%
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 31.0 3.20e-01 98.9% 51.7%
3s7vC00 2.60.175.10 Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus 0.58 54.0 4.65e-01 100.0% 92.9%
4qawH03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 40.0 4.63e-01 100.0% 97.0%
2okxA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 40.0 3.99e-01 96.6% 68.4%
4jdmA03 2.60.120.1340 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 4.65e-01 100.0% 91.6%
3demA03 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.56 34.0 4.09e-01 98.3% 92.1%
7ehgC01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 39.0 4.58e-01 99.4% 99.2%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 39.0 4.50e-01 100.0% 96.2%
1w9sA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 39.0 4.42e-01 98.9% 95.5%
1gwmA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.55 39.0 4.21e-01 98.9% 84.3%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 29.0 3.23e-01 99.4% 63.0%
3eb7A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 42.0 4.40e-01 99.4% 86.6%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 41.0 4.20e-01 100.0% 81.2%
2qfeA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.54 36.0 4.04e-01 98.3% 85.6%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 39.0 4.14e-01 100.0% 84.0%
1rj8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 4.27e-01 100.0% 92.9%
1i5pA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 39.0 4.13e-01 99.4% 83.5%
1wcuA00 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.54 39.0 4.23e-01 99.4% 88.6%
5gm0A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 40.0 4.39e-01 97.8% 94.6%
2r0hA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 4.67e-01 98.9% 98.1%
5jzgA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 43.0 3.99e-01 100.0% 68.1%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 4.40e-01 97.8% 83.4%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 41.0 4.31e-01 99.4% 88.9%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.92e-01 100.0% 62.7%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 39.0 4.38e-01 98.3% 99.3%
1x9pA01 2.60.120.550 Mainly Beta › Sandwich › Jelly Rolls › Penton protein; domain 1 0.52 40.0 4.20e-01 100.0% 88.3%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 4.33e-01 99.4% 93.6%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 3.93e-01 100.0% 63.1%
1kxgA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 38.0 4.22e-01 100.0% 95.1%
4qpwA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 4.29e-01 99.4% 97.9%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 4.44e-01 100.0% 96.2%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 4.35e-01 97.8% 89.7%
2o14A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.51 39.0 4.33e-01 100.0% 96.6%
4hltA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 32.0 3.36e-01 100.0% 69.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082706 10.29.1.2 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins › Siphovirus-type_tail_C 0.86 53.0 6.45e-01 100.0% 91.7%
400730 10.29.1.2 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins › Siphovirus-type_tail_C 0.83 52.0 6.27e-01 100.0% 91.7%
4888733 10.29.1.2 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins › Siphovirus-type_tail_C 0.80 44.0 5.86e-01 92.7% 98.0%
4032563 10.29.1.2 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in distal tail protein (Dit)-like proteins › Jelly-roll domain in distal tail protein (Dit)-like proteins › Siphovirus-type_tail_C 0.77 53.0 6.16e-01 100.0% 93.3%
3454563 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.71 33.0 4.87e-01 76.0% 100.0%
5050088 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.69 39.0 3.76e-01 96.6% 48.8%
3992318 10.32.1.177 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › UPF0669 0.69 39.0 4.44e-01 100.0% 73.3%
3597620 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.67 37.0 4.05e-01 100.0% 64.7%
4980338 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.66 41.0 5.04e-01 100.0% 96.5%
3360768 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.66 39.0 4.64e-01 100.0% 84.0%
3586546 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 43.0 4.93e-01 100.0% 90.8%
4954560 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 43.0 5.11e-01 96.6% 99.2%
3731316 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 36.0 4.50e-01 100.0% 89.1%
3523850 10.32.1.226 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Tenm3 0.63 43.0 4.84e-01 100.0% 88.6%
4101890 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.63 38.0 4.34e-01 98.9% 79.3%
4982276 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 38.0 4.73e-01 98.3% 98.2%
1731080 10.2.1.21 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Ilar_coat 0.63 41.0 4.53e-01 100.0% 80.8%
3924066 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.61 36.0 4.36e-01 98.9% 89.6%
3889463 10.32.1.225 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF31127 0.61 45.0 4.78e-01 99.4% 87.1%
3275295 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.61 38.0 4.55e-01 100.0% 93.3%
5040310 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 39.0 4.72e-01 98.9% 100.0%
5011692 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 41.0 4.37e-01 100.0% 79.4%
3607284 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 40.0 4.59e-01 100.0% 91.5%
5047105 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 44.0 4.96e-01 99.4% 97.1%
4135739 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.58 43.0 4.72e-01 100.0% 91.9%
3690841 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 42.0 4.79e-01 100.0% 98.5%
3180115 10.32.1.245 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7590 0.57 40.0 4.52e-01 99.4% 91.4%
4941983 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 42.0 4.71e-01 100.0% 96.4%
3716837 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 35.0 4.07e-01 99.4% 84.6%
5042963 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 40.0 4.41e-01 100.0% 89.7%
1031157 10.3.1.3 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › Chlam_vir 0.56 43.0 4.69e-01 100.0% 94.0%
2834439 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 40.0 4.50e-01 100.0% 94.9%
1144 10.32.1.12 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_6 0.55 39.0 4.50e-01 99.4% 99.2%
5006272 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 42.0 4.35e-01 100.0% 85.5%
3412819 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.55 40.0 4.42e-01 100.0% 93.1%
4548407 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.55 41.0 4.31e-01 98.9% 85.6%
3901524 10.3.1.0 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like 0.54 42.0 4.56e-01 100.0% 95.3%
164919 10.32.1.3 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III 0.54 36.0 4.05e-01 98.3% 86.2%
2505858 10.2.1.88 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv, Calici_coat 0.54 42.0 4.14e-01 100.0% 74.6%
3398159 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 35.0 3.94e-01 100.0% 85.9%
2579093 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 45.0 4.11e-01 100.0% 68.8%
2523954 10.3.1.1 ↗ beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.53 40.0 4.29e-01 100.0% 89.8%
2797580 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 35.0 3.77e-01 99.4% 76.6%
3932049 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.53 39.0 3.94e-01 100.0% 77.1%
3269322 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 41.0 4.23e-01 99.4% 85.2%
1211 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.53 44.0 3.92e-01 100.0% 62.7%
3260275 10.32.1.42 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PINIT 0.52 37.0 4.14e-01 99.4% 89.7%
5034438 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 40.0 4.37e-01 100.0% 95.3%
2982736 10.2.1.1 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv 0.52 43.0 3.95e-01 100.0% 67.1%
3896010 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 43.0 4.22e-01 98.9% 82.6%
1322957 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 39.0 4.29e-01 99.4% 97.9%
3482808 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 40.0 4.37e-01 100.0% 98.7%
4311256 10.32.1.18 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Endotoxin_C 0.50 40.0 4.22e-01 100.0% 90.3%