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NC_041918.2__YP_009600102.1__MUK65_gp58__00058

Bact-Vir

NC_041918.2__YP_009600102.1__MUK65_gp58__00058

Identity

Accession:
NC_041918 ↗
Kingdom:
phage

Quality

90.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saundersvirus› Geobacillus_phage_TP-84

TaxID: 1965361

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 3-64
PDB
Domain cluster: rep: KT070868.1__AKQ08626.1__PBC5_060__00060__D1-54
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11417.15 best G39P_N 45.7 9.70e-12 100.0% 95.8%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1no1A00 1.10.8.200 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Replisome organizer (g39p helicase loader/inhibitor protein) 0.94 88.0 8.64e-01 100.0% 97.0%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.70 54.0 4.65e-01 83.9% 94.8%
3b8pA00 3.30.1890.10 Alpha Beta › 2-Layer Sandwich › Bacterial polysaccharide co-polymerase-like › FepE-like 0.67 51.0 3.59e-01 85.5% 54.6%
4dbgB02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.62 45.0 4.55e-01 93.5% 78.7%
3whkA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.62 51.0 4.98e-01 100.0% 94.4%
4zpxA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 52.0 4.59e-01 95.2% 84.8%
6b5cA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.61 50.0 4.66e-01 100.0% 96.5%
5ubvA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 50.0 4.88e-01 100.0% 97.2%
1lp1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.60 45.0 4.68e-01 85.5% 92.7%
2pybA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 43.0 3.37e-01 82.3% 71.5%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.58 43.0 4.52e-01 80.6% 90.9%
2l3wA01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.57 42.0 3.41e-01 88.7% 39.1%
7f16R01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 43.0 2.84e-01 85.5% 32.9%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 41.0 3.89e-01 82.3% 65.4%
2x1dA02 1.10.10.2120 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 42.0 3.98e-01 82.3% 100.0%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 47.0 4.51e-01 100.0% 90.3%
3bosA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.55 45.0 4.44e-01 100.0% 94.0%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.54 39.0 2.90e-01 75.8% 55.7%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 41.0 3.54e-01 100.0% 51.5%
2bgwA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.52 38.0 3.68e-01 90.3% 67.6%
3hx3A01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.51 40.0 4.01e-01 91.9% 83.6%
4gxzD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 42.0 3.22e-01 100.0% 58.8%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 39.0 2.46e-01 85.5% 23.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2391 571.1.1.1 ↗ alpha arrays › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › G39P_N 0.94 88.0 8.59e-01 100.0% 95.5%
4033485 571.1.1.1 ↗ alpha arrays › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › Replisome organizer (g39p helicase loader/inhibitor protein) › G39P_N 0.87 79.0 7.83e-01 98.4% 93.8%
3989035 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.71 61.0 5.37e-01 100.0% 66.3%
4048400 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.69 59.0 5.38e-01 100.0% 74.1%
4672223 148.1.3.19 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 0.66 57.0 5.42e-01 100.0% 82.7%
4995693 4230.1.1.0 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain 0.66 55.0 5.28e-01 100.0% 82.7%
3293516 4953.1.1.23 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › YIF1 0.63 54.0 3.86e-01 100.0% 70.5%
3929822 148.1.3.6 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Vps4_C,AAA_lid_3 0.62 51.0 4.55e-01 100.0% 83.0%
4471800 148.1.3.237 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30483 0.62 50.0 4.87e-01 100.0% 84.0%
4016526 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 53.0 5.17e-01 100.0% 94.3%
3942493 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 52.0 4.92e-01 100.0% 86.7%
1503071 632.2.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › GA 0.59 44.0 4.60e-01 80.6% 89.3%
3259748 3589.1.1.1 ↗ a+b complex topology › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RNAi polymerase N-terminal domain › RdRP 0.59 50.0 3.53e-01 100.0% 30.0%
1066204 141.1.1.1 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt 0.55 49.0 3.18e-01 100.0% 39.1%
3727381 2007.6.1.12 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › GKRP_SIS_N 0.54 42.0 2.71e-01 85.5% 22.3%
3299042 148.1.1.4 ↗ alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.54 43.0 3.33e-01 93.5% 78.7%
4107114 516.1.1.1 ↗ alpha arrays › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › YgfY-like (DUP399, Pfam03937) › Sdh5 0.53 42.0 3.94e-01 96.8% 85.9%
3551458 103.1.1.3 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › CRAL_TRIO_N 0.52 41.0 3.80e-01 93.5% 68.8%
4853596 3144.1.1.1 ↗ alpha arrays › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS linker domain of phycobilisome linker polypeptide › PBS_linker_poly 0.51 39.0 3.54e-01 85.5% 64.4%
2784516 5037.1.1.1 ↗ alpha bundles › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Bacterial photosystem II reaction centre L and M subunits-like › Photo_RC 0.50 35.0 2.31e-01 75.8% 38.0%