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NC_041918.2__YP_009600116.1__MUK65_gp73__00073

Bact-Vir

NC_041918.2__YP_009600116.1__MUK65_gp73__00073

Identity

Accession:
NC_041918 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Saundersvirus› Geobacillus_phage_TP-84

TaxID: 1965361

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-85
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.79 70.0 5.89e-01 95.8% 82.5%
4c91A03 1.20.58.2150 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 53.0 3.94e-01 71.8% 50.8%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.76 69.0 5.88e-01 98.6% 83.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.73 57.0 5.55e-01 83.1% 93.5%
2nn4A00 1.10.287.760 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like 0.72 55.0 5.91e-01 85.9% 93.5%
1cunA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 52.0 4.66e-01 80.3% 98.0%
5mdtA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 56.0 4.38e-01 87.3% 69.7%
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 45.0 5.15e-01 88.7% 95.9%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.66 47.0 4.60e-01 76.1% 100.0%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.64 59.0 5.01e-01 98.6% 89.9%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.62 49.0 4.82e-01 85.9% 98.7%
1ybxA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.61 44.0 4.02e-01 95.8% 58.2%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.61 43.0 3.96e-01 98.6% 57.0%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 54.0 4.68e-01 98.6% 89.0%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.61 56.0 4.67e-01 100.0% 91.5%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.61 53.0 4.16e-01 97.2% 55.9%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.61 51.0 4.39e-01 88.7% 68.6%
2kkmA01 1.20.1440.170 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Translation machinery-associated protein 16-like 0.60 50.0 4.08e-01 88.7% 96.8%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.60 50.0 4.98e-01 90.1% 87.7%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.59 52.0 4.97e-01 95.8% 100.0%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 48.0 3.49e-01 97.2% 41.5%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 47.0 4.14e-01 100.0% 83.3%
2mhdA00 2.40.128.370 Mainly Beta › Beta Barrel › Lipocalin › 0.54 38.0 3.23e-01 83.1% 47.3%
1qwkA00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.53 45.0 2.99e-01 95.8% 75.3%
1t7lB01 3.20.20.210 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.53 45.0 2.88e-01 97.2% 31.7%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 43.0 3.48e-01 91.5% 63.0%
4wfsA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 40.0 2.92e-01 87.3% 38.3%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.51 42.0 3.41e-01 90.1% 47.1%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.51 38.0 4.04e-01 83.1% 93.7%
2x0qA04 1.10.510.40 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › 0.50 38.0 2.85e-01 83.1% 68.6%
3ia1B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 36.0 2.97e-01 77.5% 80.3%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3555742 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.83 57.0 5.31e-01 70.4% 76.5%
4971062 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.78 60.0 5.59e-01 80.3% 95.3%
5048976 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.76 61.0 4.82e-01 100.0% 42.8%
5043437 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.71 54.0 4.68e-01 80.3% 92.4%
3494026 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.68 57.0 4.64e-01 93.0% 72.6%
2889550 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.66 54.0 5.07e-01 87.3% 91.7%
5077975 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 4.41e-01 83.1% 89.5%
5014656 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.63 40.0 4.22e-01 95.8% 70.8%
4337520 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.63 44.0 3.91e-01 98.6% 52.0%
5075780 3684.1.1.0 ↗ alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.63 47.0 3.81e-01 80.3% 71.1%
4391637 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.62 44.0 4.02e-01 98.6% 57.8%
2597170 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.61 54.0 3.99e-01 98.6% 93.5%
3592036 3291.1.1.16 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Flagellar_rod 0.61 56.0 3.90e-01 100.0% 49.5%
3408369 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.60 46.0 4.59e-01 85.9% 86.7%
3189865 310.2.1.1 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.60 53.0 3.75e-01 100.0% 93.2%
3800251 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 43.0 4.31e-01 91.5% 73.3%
4236240 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.59 44.0 4.01e-01 98.6% 58.9%
None — 0.55 46.0 3.14e-01 95.8% 30.7%