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NC_041921.1__YP_009600185.1__FDH38_gp061__00061

Bact-Vir

Identity

Accession:: NC_041921 ↗
Kingdom:: phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nanhaivirus› Dinoroseobacter_phage_vB_DshS-R5C

TaxID: 1965368

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-128

PDB

Domain cluster: rep: OP712474.1__WBF76922.1__PSV3_00220__00021__D2-82

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF27119.1 best	Phage_YdaY	87.1	1.00e-24	86.8%	95.0%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4rocA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.65	38.0	3.89e-01	71.7%	59.2%
2f2cA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.63	37.0	3.70e-01	78.3%	56.0%
1zp2A02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.61	36.0	3.62e-01	71.7%	55.4%
2w96A02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.59	36.0	3.57e-01	78.3%	56.6%
1aisB02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.58	34.0	3.61e-01	70.8%	63.8%
4omhB00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.57	48.0	3.60e-01	93.4%	75.9%
5fglA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	43.0	3.50e-01	79.2%	88.5%
1c9bA01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.56	33.0	3.49e-01	70.8%	62.9%
3kzhB00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.56	35.0	2.48e-01	74.5%	21.0%
2f2cA02	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.54	34.0	3.45e-01	71.7%	62.3%
3d0wA00	1.10.760.20	Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Protein of unknown function DUF3243	0.53	36.0	3.94e-01	80.2%	87.2%
2i53A01	1.10.472.10	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like	0.52	38.0	3.47e-01	77.4%	99.3%
2ajrA01	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.51	33.0	2.49e-01	74.5%	25.7%

ECOD (9)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1276701	101.1.10.1 ↗	alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N	0.61	36.0	3.44e-01	71.7%	47.7%
5067100	101.1.10.3 ↗	alpha arrays › HTH › HTH › Cyclin-like › TFIIB	0.60	33.0	3.65e-01	77.4%	65.9%
3800840	5076.1.1.0 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier	0.55	45.0	3.38e-01	92.5%	88.8%
4990358	3843.1.1.0 ↗	alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K	0.55	37.0	4.13e-01	76.4%	91.3%
3650365	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.54	34.0	3.57e-01	78.3%	68.4%
3183917	5076.1.1.1 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr	0.54	45.0	3.34e-01	93.4%	91.9%
3488467	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.54	36.0	3.50e-01	78.3%	61.7%
3250201	101.1.1.21 ↗	alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5	0.53	33.0	3.89e-01	86.8%	98.5%
3938194	5001.1.1.0 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like	0.50	40.0	2.87e-01	84.9%	68.9%