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NC_041925.1__YP_009600592.1__QIH99_gp10__00010

Bact-Vir

NC_041925.1__YP_009600592.1__QIH99_gp10__00010

Identity

Accession:
NC_041925 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bd1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.84 76.0 6.96e-01 100.0% 76.9%
2mqkA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.78 69.0 6.33e-01 100.0% 90.8%
2bnmA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.77 65.0 5.84e-01 100.0% 74.3%
3op9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 64.0 5.90e-01 100.0% 79.4%
2auwB02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 64.0 5.85e-01 100.0% 78.6%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 64.0 5.38e-01 100.0% 59.3%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 64.0 6.01e-01 100.0% 84.1%
1d1lA00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.75 61.0 5.73e-01 90.0% 75.4%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.75 63.0 4.48e-01 100.0% 31.7%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 64.0 5.89e-01 100.0% 81.8%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.75 62.0 5.55e-01 100.0% 71.4%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.74 61.0 5.50e-01 100.0% 72.0%
3bs3A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 63.0 6.00e-01 100.0% 86.7%
2ictA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 61.0 5.34e-01 100.0% 66.7%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 61.0 5.43e-01 100.0% 71.4%
2r1jL00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 60.0 5.65e-01 100.0% 81.8%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 60.0 5.24e-01 100.0% 66.7%
2ebyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.73 60.0 5.33e-01 100.0% 69.6%
1ic8A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 61.0 5.07e-01 100.0% 60.6%
2jvwA01 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.72 62.0 5.89e-01 100.0% 91.7%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 61.0 5.67e-01 100.0% 84.6%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 60.0 4.90e-01 100.0% 53.4%
2a6cA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.72 60.0 5.38e-01 100.0% 73.7%
1y7yA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 60.0 5.52e-01 100.0% 78.3%
3g7dA04 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 61.0 5.03e-01 96.0% 60.4%
2ofyA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 59.0 5.43e-01 100.0% 75.7%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 59.0 4.98e-01 100.0% 69.9%
1lliA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 59.0 5.04e-01 100.0% 64.0%
3fymA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 59.0 5.16e-01 100.0% 73.2%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 58.0 5.03e-01 100.0% 64.7%
2elhA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 4.54e-01 74.0% 62.1%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 60.0 5.45e-01 100.0% 76.1%
3b7hA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 58.0 5.19e-01 100.0% 72.4%
2fjrA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.70 60.0 5.32e-01 100.0% 71.1%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 58.0 5.27e-01 100.0% 75.0%
2cw1A00 3.30.240.10 Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor 0.69 57.0 5.29e-01 96.0% 72.3%
2l1pA00 1.10.260.70 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › SATB, CULT domain 0.69 58.0 5.05e-01 100.0% 68.7%
1l3lA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 4.40e-01 72.0% 61.9%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 48.0 4.57e-01 74.0% 71.9%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 54.0 4.66e-01 100.0% 54.7%
4ghjB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.68 58.0 5.11e-01 100.0% 69.7%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 43.0 4.10e-01 72.0% 60.7%
3oc2A01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.60 50.0 3.57e-01 100.0% 32.9%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.58 39.0 3.44e-01 72.0% 53.7%
1tk5A04 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.57 44.0 3.73e-01 94.0% 77.8%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 38.0 3.43e-01 70.0% 61.6%
3dteA02 1.10.10.1030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain 0.57 39.0 4.10e-01 72.0% 95.1%
1tr8A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 38.0 4.16e-01 100.0% 92.3%
4hl4A02 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.53 39.0 3.04e-01 88.0% 99.3%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 2.84e-01 100.0% 38.4%
4i3vA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 43.0 2.80e-01 100.0% 69.1%
5xbfA02 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.51 39.0 3.39e-01 98.0% 99.0%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 41.0 2.72e-01 100.0% 53.1%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037780 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.88 79.0 6.68e-01 100.0% 63.7%
5066994 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.85 76.0 6.49e-01 100.0% 65.0%
5011442 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.85 76.0 6.79e-01 100.0% 82.9%
4963278 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.82 67.0 6.36e-01 100.0% 76.7%
4994602 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.82 72.0 6.79e-01 98.0% 90.0%
3963429 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.81 71.0 6.92e-01 100.0% 96.4%
4970801 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.80 70.0 5.89e-01 100.0% 63.5%
4979523 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.80 70.0 5.79e-01 100.0% 57.8%
3699551 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.79 69.0 5.93e-01 100.0% 71.2%
4933148 101.1.4.96 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PolC_DP2_central 0.79 68.0 5.66e-01 100.0% 62.2%
1563574 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.78 69.0 6.33e-01 100.0% 90.8%
3960854 101.1.4.18 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.78 68.0 5.90e-01 100.0% 69.2%
3943710 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.77 66.0 6.10e-01 96.0% 81.5%
3965656 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 66.0 5.72e-01 100.0% 66.3%
3166016 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.77 67.0 6.35e-01 100.0% 98.3%
3164312 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.77 65.0 5.67e-01 100.0% 66.3%
3953342 101.1.4.61 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › PF27182 0.76 62.0 4.61e-01 94.0% 40.7%
1510513 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.76 64.0 5.12e-01 100.0% 50.5%
2581392 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.76 64.0 5.81e-01 100.0% 76.1%
3588951 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 64.0 6.10e-01 100.0% 91.7%
3231460 101.1.4.5 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N 0.75 63.0 5.18e-01 100.0% 60.0%
3978768 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 62.0 5.72e-01 94.0% 78.5%
4150908 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 63.0 5.09e-01 100.0% 49.5%
4678741 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 64.0 5.70e-01 100.0% 73.3%
4537353 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 64.0 4.84e-01 100.0% 43.2%
5028710 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.75 63.0 5.63e-01 100.0% 76.0%
5071803 101.45.1.0 alpha arrays › HTH › DNA polymerase II large subunit DP2 helical domain › DNA polymerase II large subunit DP2 helical domain 0.75 63.0 5.40e-01 100.0% 67.1%
3985012 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.75 62.0 5.55e-01 100.0% 69.3%
3973014 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.74 64.0 5.96e-01 100.0% 83.1%
4057001 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.74 63.0 5.50e-01 100.0% 77.5%
5023561 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.74 61.0 5.21e-01 100.0% 67.8%
3612783 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.74 63.0 4.95e-01 100.0% 46.4%
4061717 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.74 61.0 4.97e-01 100.0% 52.4%
4940014 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 63.0 5.60e-01 100.0% 85.3%
3604422 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.73 60.0 5.56e-01 100.0% 75.7%
3589930 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 61.0 5.47e-01 100.0% 69.3%
3965368 101.1.4.20 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.73 61.0 5.37e-01 100.0% 70.0%
3593198 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.73 62.0 6.25e-01 100.0% 100.0%
4405465 101.1.4.5 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N 0.73 60.0 4.98e-01 100.0% 58.0%
3409145 101.1.1.24 alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N 0.73 51.0 5.16e-01 74.0% 82.0%
3983992 101.1.4.20 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.73 61.0 5.37e-01 100.0% 71.2%
2791 101.1.4.20 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_37 0.73 61.0 5.17e-01 100.0% 62.9%
184691 130.2.1.1 alpha arrays › LEM/SAP HeH motif-like › PF09905 (DUF2132) › PF09905 (DUF2132) › VF530 0.72 62.0 5.33e-01 100.0% 67.1%
4955745 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.72 61.0 5.69e-01 100.0% 78.5%
4952242 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.72 60.0 5.47e-01 100.0% 77.1%
4114937 101.1.4.5 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HNF-1_N 0.71 59.0 4.67e-01 100.0% 47.8%
2775 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.71 59.0 5.18e-01 100.0% 64.6%
4530543 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.71 61.0 5.46e-01 96.0% 78.6%
3278834 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.71 58.0 5.37e-01 100.0% 78.6%
4031147 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.70 58.0 5.60e-01 100.0% 93.3%
3587013 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.70 59.0 5.66e-01 100.0% 95.0%
3589834 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.70 59.0 5.51e-01 100.0% 83.1%
2767750 101.1.4.8 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Phage_CP76 0.68 56.0 4.90e-01 100.0% 63.1%
4032484 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.68 55.0 5.34e-01 100.0% 93.3%
2389361 101.1.4.11 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Cro 0.67 55.0 5.22e-01 94.0% 77.4%
4034594 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 43.0 4.25e-01 74.0% 78.2%
4032353 102.8.1.1 alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain › HIGH_NTase1 0.62 50.0 3.80e-01 100.0% 46.9%
4140146 7599.1.1.1 a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD 0.60 48.0 3.23e-01 100.0% 44.4%
5027617 3054.1.1.0 alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol 0.59 49.0 4.06e-01 100.0% 77.0%
3804077 3722.1.1.3 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › DUF3490 0.57 46.0 4.20e-01 100.0% 81.3%
3341254 130.1.1.43 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF3490 0.57 46.0 4.18e-01 100.0% 81.3%
3191689 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.55 45.0 2.86e-01 94.0% 52.1%
4264297 101.1.2.760 alpha arrays › HTH › HTH › winged helix domain › PF30824 0.53 37.0 2.87e-01 78.0% 40.7%
4986503 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.53 43.0 3.04e-01 100.0% 54.2%