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NC_041925.1__YP_009600600.1__QIH99_gp18__00018

Bact-Vir

NC_041925.1__YP_009600600.1__QIH99_gp18__00018

Identity

Accession:
NC_041925 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gorganvirus› Proteus_phage_VB_PmiS-Isfahan

TaxID: 1969841

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-43
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xkoC01 2.30.30.660 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) 0.85 73.0 6.80e-01 100.0% 89.6%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.82 71.0 6.38e-01 100.0% 82.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 70.0 6.18e-01 100.0% 76.8%
2k52A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 63.0 5.05e-01 86.5% 86.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 70.0 5.83e-01 100.0% 65.6%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.80 68.0 6.32e-01 100.0% 85.4%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.79 66.0 5.10e-01 100.0% 48.3%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 64.0 5.60e-01 100.0% 88.3%
2je6I02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 59.0 4.51e-01 86.5% 79.5%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 62.0 5.88e-01 97.3% 95.7%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 62.0 5.18e-01 100.0% 75.7%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 64.0 5.74e-01 100.0% 81.5%
3j7yD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 62.0 4.97e-01 100.0% 63.0%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 5.78e-01 100.0% 89.6%
1irxA02 2.30.30.300 Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like 0.75 62.0 5.98e-01 100.0% 93.0%
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 57.0 4.41e-01 86.5% 78.2%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.73 54.0 4.43e-01 83.8% 43.8%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.71 58.0 4.04e-01 100.0% 29.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.70 59.0 4.99e-01 100.0% 66.7%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 57.0 4.96e-01 100.0% 87.5%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.28e-01 100.0% 80.0%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.70 57.0 5.27e-01 100.0% 92.2%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.70 55.0 4.42e-01 94.6% 97.6%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 58.0 5.37e-01 100.0% 76.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.20e-01 100.0% 82.0%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.68 46.0 3.95e-01 75.7% 40.9%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 54.0 3.28e-01 94.6% 52.1%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 58.0 4.37e-01 100.0% 92.6%
3lzhA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 52.0 4.10e-01 94.6% 95.6%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.66 52.0 4.40e-01 94.6% 53.6%
2id0A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 48.0 3.97e-01 86.5% 71.8%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.66 53.0 3.01e-01 94.6% 22.1%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 54.0 3.85e-01 94.6% 65.0%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.66 46.0 3.99e-01 75.7% 50.0%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 51.0 4.25e-01 100.0% 72.0%
2khjA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 46.0 3.68e-01 86.5% 76.4%
1w97L02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.63 43.0 3.59e-01 75.7% 40.0%
5yrzB00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.61 47.0 4.31e-01 97.3% 72.4%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.61 45.0 3.49e-01 83.8% 43.6%
1ml8A01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 42.0 4.26e-01 73.0% 94.1%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.61 45.0 3.05e-01 89.2% 55.2%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.61 43.0 3.66e-01 94.6% 41.7%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 47.0 3.55e-01 100.0% 91.5%
1dwnA00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.59 46.0 3.37e-01 100.0% 44.1%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 45.0 3.44e-01 100.0% 93.0%
2wmmA02 3.30.70.3500 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MukB, hinge domain 0.58 46.0 3.46e-01 97.3% 64.6%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 40.0 2.53e-01 83.8% 33.6%
1vr5A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 47.0 3.19e-01 100.0% 78.2%
2hjjA00 3.30.160.130 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains 0.55 43.0 3.73e-01 97.3% 66.7%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.51e-01 100.0% 50.0%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 42.0 3.02e-01 100.0% 30.2%
1b66A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.51 39.0 2.81e-01 91.9% 91.3%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 2.66e-01 91.9% 66.5%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4844109 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.87 75.0 6.09e-01 100.0% 57.7%
3443078 4.1.1.330 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.86 76.0 4.81e-01 100.0% 22.9%
3420348 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.85 75.0 6.60e-01 100.0% 74.5%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.85 75.0 5.69e-01 100.0% 49.4%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.84 74.0 6.51e-01 100.0% 69.1%
None — 0.84 74.0 3.88e-01 100.0% 3.2%
3299797 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.84 73.0 6.24e-01 100.0% 68.3%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.84 73.0 6.67e-01 100.0% 82.0%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.84 73.0 6.64e-01 100.0% 82.0%
3656232 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.84 74.0 6.97e-01 100.0% 82.2%
4027422 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.83 73.0 6.41e-01 100.0% 74.5%
3554026 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.83 72.0 6.18e-01 100.0% 80.0%
3574613 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.83 72.0 5.23e-01 100.0% 41.0%
3546607 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 71.0 6.52e-01 100.0% 82.0%
3216433 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 69.0 6.76e-01 97.3% 100.0%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 70.0 6.05e-01 100.0% 68.3%
4191690 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.82 70.0 6.11e-01 100.0% 69.0%
3938589 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.82 68.0 6.32e-01 100.0% 82.0%
3770704 2.1.1.49 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MRP-S35 0.81 63.0 5.31e-01 83.8% 51.7%
3775592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.81 70.0 3.62e-01 100.0% 2.6%
3964846 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.80 66.0 5.18e-01 100.0% 45.9%
3926672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 67.0 5.67e-01 100.0% 80.0%
4325815 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 67.0 3.67e-01 100.0% 6.6%
3785795 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.79 62.0 4.82e-01 86.5% 87.5%
5042477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 67.0 6.37e-01 100.0% 82.2%
4232512 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.79 62.0 4.76e-01 86.5% 79.5%
3553983 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.79 68.0 5.82e-01 100.0% 80.0%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 66.0 5.71e-01 100.0% 66.1%
4347999 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.79 68.0 5.67e-01 100.0% 58.5%
3989139 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.78 65.0 5.51e-01 100.0% 56.9%
4418620 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.78 65.0 3.46e-01 100.0% 4.0%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.78 65.0 5.08e-01 100.0% 48.2%
3839849 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.77 64.0 5.48e-01 100.0% 56.9%
4287233 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.77 61.0 4.29e-01 86.5% 65.5%
4289165 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.77 59.0 4.36e-01 86.5% 68.0%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.77 64.0 4.17e-01 100.0% 23.4%
4611708 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.77 65.0 5.65e-01 100.0% 61.7%
4662947 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.76 64.0 5.42e-01 100.0% 58.5%
4331473 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.76 63.0 5.02e-01 100.0% 48.8%
3480350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 61.0 5.30e-01 100.0% 78.5%
5037215 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 59.0 4.78e-01 86.5% 74.3%
4862202 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.75 58.0 5.49e-01 94.6% 79.6%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 63.0 5.21e-01 100.0% 58.6%
4279317 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.75 63.0 3.52e-01 100.0% 8.8%
5008972 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.75 63.0 3.52e-01 100.0% 8.8%
3839042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 60.0 5.77e-01 94.6% 84.4%
3278801 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.75 62.0 5.29e-01 100.0% 58.5%
3244959 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.75 57.0 4.71e-01 86.5% 87.1%
3956735 6055.1.1.1 ↗ extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › YajC 0.74 61.0 5.84e-01 100.0% 82.2%
4947695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 58.0 4.83e-01 100.0% 80.0%
3931369 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.72 58.0 5.40e-01 97.3% 100.0%
4026678 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 62.0 5.10e-01 100.0% 58.6%
5056599 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.71 56.0 3.87e-01 100.0% 31.3%
3947337 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.70 58.0 3.87e-01 100.0% 23.2%
3970579 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.70 58.0 3.94e-01 100.0% 27.3%
5002601 4.1.1.485 ↗ beta barrels › SH3 › SH3 › SH3 › DUF6897 0.69 56.0 5.03e-01 100.0% 76.3%
4214438 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 56.0 4.81e-01 100.0% 75.4%
4514731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 58.0 4.54e-01 100.0% 52.9%
3987478 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.68 57.0 3.97e-01 100.0% 28.5%
3617551 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.67 59.0 4.90e-01 100.0% 80.0%
5012884 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 55.0 4.29e-01 100.0% 80.0%
3257938 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.66 54.0 4.74e-01 97.3% 73.3%
5055849 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.66 53.0 4.52e-01 94.6% 55.4%
3959903 243.18.1.1 ↗ a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.66 51.0 3.34e-01 100.0% 73.2%
4046385 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.65 54.0 3.75e-01 100.0% 26.4%
4325664 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.65 55.0 4.73e-01 97.3% 66.7%
3703424 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.65 51.0 3.99e-01 94.6% 51.1%
4968507 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.62 43.0 3.03e-01 78.4% 28.6%
3602260 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.61 51.0 4.15e-01 100.0% 84.0%