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NC_041925.1__YP_009600610.1__QIH99_gp28__00028

Bact-Vir

Identity

Accession:: NC_041925 ↗
Kingdom:: phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gorganvirus› Proteus_phage_VB_PmiS-Isfahan

TaxID: 1969841

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-51

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2k5iA02	2.30.30.90	Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA)	0.65	55.0	4.86e-01	100.0%	74.4%
4iimA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.64	57.0	5.47e-01	100.0%	94.7%
2j58A03	3.30.1950.10	Alpha Beta › 2-Layer Sandwich › wza like fold › wza like domain	0.62	52.0	4.57e-01	100.0%	96.3%
1wzoA01	2.30.30.370	Mainly Beta › Roll › SH3 type barrels. › FAH	0.61	43.0	4.53e-01	100.0%	97.5%
2heqA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.59	50.0	4.96e-01	100.0%	100.0%
5wb2B00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.59	43.0	3.87e-01	80.0%	64.4%
2dfuA01	2.30.30.370	Mainly Beta › Roll › SH3 type barrels. › FAH	0.57	43.0	4.43e-01	100.0%	97.7%
3axbA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.55	42.0	2.74e-01	88.0%	96.0%
4b6dB00	3.30.60.20	Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 ›	0.54	36.0	3.53e-01	70.0%	86.0%
3v10A02	2.60.40.740	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.52	44.0	3.25e-01	100.0%	34.2%
3gt2A00	3.90.1720.10	Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme)	0.52	41.0	3.13e-01	100.0%	34.8%
4hcsA00	2.40.50.40	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) ›	0.51	36.0	3.35e-01	76.0%	77.6%
3h8lA02	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.51	41.0	3.03e-01	96.0%	96.7%
4f4oC01	2.10.70.10	Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1	0.51	36.0	3.56e-01	90.0%	71.9%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5006089	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.69	58.0	5.55e-01	100.0%	85.0%
1174966	4.1.1.40 ↗	beta barrels › SH3 › SH3 › SH3 › FeoA	0.65	55.0	4.74e-01	100.0%	68.2%
3995160	4.1.1.233 ↗	beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N	0.59	47.0	4.77e-01	100.0%	94.0%
4952074	219.1.1.13 ↗	a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core	0.57	47.0	3.48e-01	100.0%	36.0%
3500183	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.56	48.0	3.49e-01	100.0%	40.7%
3505725	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.55	45.0	4.44e-01	98.0%	94.5%
4055545	7577.1.1.2 ↗	a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_3	0.55	36.0	2.42e-01	88.0%	15.2%
4105348	4.1.1.394 ↗	beta barrels › SH3 › SH3 › SH3 › SlpA	0.55	47.0	4.36e-01	96.0%	98.4%
3985761	4294.1.1.4 ↗	few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › RlmA_N	0.52	37.0	3.71e-01	86.0%	78.0%
3421158	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.52	43.0	4.14e-01	100.0%	88.3%
3582840	2.1.1.37 ↗	beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind	0.52	42.0	3.20e-01	94.0%	57.6%