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NC_041925.1__YP_009600617.1__QIH99_gp35__00035
Bact-VirNC_041925.1__YP_009600617.1__QIH99_gp35__00035
Identity
- Accession:
- NC_041925 ↗
- Kingdom:
- phage
Quality
96.4
mean pLDDT
Taxonomy
TaxID: 1969841
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-94
Domain cluster:
rep: MK387309.1__QAY18001.1__X__00047__D41-70_94-140
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4trtA02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.74 | 67.0 | 6.19e-01 | 100.0% | 89.9% |
| 1vpkA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.74 | 67.0 | 6.14e-01 | 100.0% | 90.0% |
| 3pweA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.73 | 66.0 | 5.99e-01 | 100.0% | 88.6% |
| 4trtA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.73 | 66.0 | 6.01e-01 | 100.0% | 87.7% |
| 6ptrB01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.73 | 66.0 | 6.18e-01 | 100.0% | 96.5% |
| 3ed4A02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.70 | 32.0 | 3.38e-01 | 97.8% | 49.4% |
| 2l1sA00 | 3.10.450.160 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › inner membrane protein cigr | 0.64 | 34.0 | 3.64e-01 | 100.0% | 57.8% |
| 2yzyA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.63 | 32.0 | 2.63e-01 | 100.0% | 28.2% |
| 4csbA00 | 2.40.128.480 | Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein | 0.62 | 44.0 | 4.17e-01 | 74.2% | 81.4% |
| 3vn5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.59 | 25.0 | 2.84e-01 | 96.8% | 47.8% |
| 4hn7A00 | 2.40.50.650 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 38.0 | 3.99e-01 | 100.0% | 77.6% |
| 2yyzA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 33.0 | 3.85e-01 | 92.5% | 96.6% |
| 5wbyC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 39.0 | 2.78e-01 | 80.6% | 59.1% |
| 6vp6A03 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 39.0 | 2.79e-01 | 82.8% | 70.2% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 39.0 | 2.76e-01 | 82.8% | 67.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995742 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 69.0 | 6.54e-01 | 100.0% | 91.8% |
| 4995743 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.75 | 68.0 | 6.26e-01 | 100.0% | 90.8% |
| 4876748 | 227.1.1.3 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta | 0.73 | 66.0 | 5.99e-01 | 100.0% | 87.1% |
| 3997284 | 6043.1.1.4 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 | 0.70 | 31.0 | 3.84e-01 | 96.8% | 65.1% |
| 3363154 | 6043.1.1.4 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › PHAF1 | 0.68 | 32.0 | 3.39e-01 | 98.9% | 51.2% |
| 3478678 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 35.0 | 3.93e-01 | 100.0% | 66.7% |
| 3199835 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 34.0 | 3.82e-01 | 100.0% | 65.3% |
| None | — | 0.60 | 44.0 | 3.04e-01 | 79.6% | 51.1% | |
| 3251391 | 5.1.4.297 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, NBCH_WD40 | 0.54 | 41.0 | 2.89e-01 | 83.9% | 85.3% |
| 3507571 | 5.1.4.47 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PHTB1_N | 0.54 | 41.0 | 2.81e-01 | 82.8% | 81.1% |
| 3560187 | 5.1.4.45 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 | 0.52 | 41.0 | 2.71e-01 | 84.9% | 74.1% |
| 3669556 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.51 | 33.0 | 3.42e-01 | 97.8% | 70.6% |
| 1406536 | 5.1.4.21 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 | 0.51 | 38.0 | 2.72e-01 | 80.6% | 56.5% |
| 4954309 | 2.1.1.375 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MJ0548_C | 0.51 | 37.0 | 3.76e-01 | 100.0% | 80.0% |
| 3505970 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.51 | 35.0 | 2.62e-01 | 73.1% | 70.0% |
| 3404770 | 5.1.4.175 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT122_2nd | 0.50 | 37.0 | 2.79e-01 | 80.6% | 73.3% |
| 5054848 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.50 | 34.0 | 3.39e-01 | 97.8% | 66.0% |
D2
high
residues 102-160
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 46.0 | 3.81e-01 | 71.2% | 53.3% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.60 | 46.0 | 3.58e-01 | 84.7% | 56.9% |
| 2bzyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 35.0 | 3.45e-01 | 94.9% | 53.2% |
| 2bs6A01 | 2.40.128.190 | Mainly Beta › Beta Barrel › Lipocalin › | 0.59 | 46.0 | 4.10e-01 | 84.7% | 81.0% |
| 4csdB00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.59 | 46.0 | 3.05e-01 | 88.1% | 75.3% |
| 4c26A00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.57 | 38.0 | 3.72e-01 | 98.3% | 62.1% |
| 4zqbB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 39.0 | 3.02e-01 | 71.2% | 77.4% |
| 6n8pA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 44.0 | 2.77e-01 | 91.5% | 88.3% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.56 | 38.0 | 2.93e-01 | 72.9% | 96.7% |
| 2heuB01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 40.0 | 3.02e-01 | 83.1% | 79.7% |
| 3s8zA02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 40.0 | 2.53e-01 | 83.1% | 19.0% |
| 3e10A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 42.0 | 3.13e-01 | 91.5% | 59.6% |
| 4ol8B02 | 3.10.10.10 | Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 0.52 | 40.0 | 3.34e-01 | 89.8% | 86.7% |
| 3c1yA01 | 3.40.1700.10 | Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain | 0.51 | 37.0 | 2.78e-01 | 76.3% | 92.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3403782 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 43.0 | 4.22e-01 | 71.2% | 76.9% |
| 3679631 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.62 | 53.0 | 3.34e-01 | 100.0% | 83.0% |
| 3620042 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.62 | 46.0 | 4.13e-01 | 79.7% | 74.7% |
| 4466130 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.59 | 41.0 | 2.97e-01 | 72.9% | 25.7% |
| 3936775 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.59 | 42.0 | 3.02e-01 | 74.6% | 28.8% |
| 3497279 | 59.1.4.0 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 | 0.57 | 41.0 | 3.04e-01 | 76.3% | 32.9% |
| 3777525 | 2004.1.1.230 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Tsr1_G-like | 0.57 | 39.0 | 2.79e-01 | 72.9% | 69.2% |
| 3245878 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.57 | 42.0 | 3.01e-01 | 79.7% | 27.8% |
| 3739215 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.56 | 38.0 | 2.60e-01 | 72.9% | 30.4% |
| 3988707 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.56 | 39.0 | 4.03e-01 | 76.3% | 80.0% |
| 3743864 | 109.4.1.1787 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nup188_N-subdom_III | 0.54 | 43.0 | 2.37e-01 | 91.5% | 10.2% |
| 3419120 | 59.1.4.1 ↗ | beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › TAFII55_N | 0.53 | 39.0 | 2.94e-01 | 79.7% | 37.4% |
| 5037375 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.53 | 38.0 | 3.16e-01 | 79.7% | 42.5% |
| 4002382 | 7525.1.1.2 ↗ | a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 | 0.53 | 45.0 | 2.92e-01 | 98.3% | 34.9% |
| 4943297 | 2006.1.3.30 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Topoisom_bac | 0.53 | 41.0 | 3.10e-01 | 93.2% | 33.5% |
| 3461166 | 5.1.4.414 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lgl_C | 0.52 | 45.0 | 2.76e-01 | 100.0% | 77.3% |
| 3900771 | 330.9.1.0 ↗ | a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p | 0.52 | 38.0 | 3.80e-01 | 83.1% | 80.0% |
| 4100996 | 243.6.1.6 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › YebU_pre-PUA_dom | 0.51 | 38.0 | 3.30e-01 | 81.4% | 75.8% |
| 3166717 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 38.0 | 3.73e-01 | 100.0% | 75.4% |
| 4989408 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.51 | 39.0 | 3.41e-01 | 83.1% | 62.9% |
| 5078178 | 4.1.1.40 ↗ | beta barrels › SH3 › SH3 › SH3 › FeoA | 0.50 | 40.0 | 3.72e-01 | 88.1% | 73.3% |
| 3963468 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 44.0 | 3.69e-01 | 100.0% | 92.4% |