←Back to structures

NC_041925.1__YP_009600660.1__QIH99_gp78__00078

Bact-Vir

Identity

Accession:: NC_041925 ↗
Kingdom:: phage

Quality

96.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gorganvirus› Proteus_phage_VB_PmiS-Isfahan

TaxID: 1969841

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-65

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5fglA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.68	57.0	4.01e-01	92.3%	66.5%
2w43A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.67	52.0	5.45e-01	100.0%	96.5%
3u5ei01	1.10.10.1760	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L36	0.67	40.0	3.97e-01	100.0%	56.7%
2pjqA01	1.10.472.50	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like	0.63	45.0	4.11e-01	93.8%	56.2%
7ae2A01	1.20.120.580	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like	0.62	46.0	3.62e-01	80.0%	43.8%
2e2oA02	3.30.420.40	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain	0.60	51.0	3.80e-01	95.4%	83.9%
3k7dA03	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.59	51.0	4.10e-01	100.0%	97.0%
1sg2A00	3.30.910.20	Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain	0.53	39.0	3.08e-01	78.5%	41.8%
2ox6D00	1.10.3100.10	Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein	0.53	42.0	3.23e-01	100.0%	36.6%
1vhnA02	1.10.1200.80	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2	0.52	44.0	4.36e-01	100.0%	91.5%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5045083	101.1.10.0 ↗	alpha arrays › HTH › HTH › Cyclin-like	0.68	55.0	4.00e-01	100.0%	31.1%
3798193	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.68	51.0	4.93e-01	100.0%	70.7%
5045219	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.65	49.0	3.88e-01	81.5%	49.6%
4941280	7000.1.1.0 ↗	alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS	0.60	45.0	3.59e-01	83.1%	61.4%
1833027	2484.1.1.21 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG	0.60	51.0	3.65e-01	95.4%	72.7%
3789792	164.1.1.0 ↗	alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II	0.57	50.0	4.46e-01	100.0%	68.4%
3927150	101.1.1.28 ↗	alpha arrays › HTH › HTH › Three-helical HTH › SWIRM	0.57	49.0	4.09e-01	100.0%	55.5%
5028219	632.11.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like	0.56	37.0	3.39e-01	78.5%	50.0%
4953661	606.1.1.1 ↗	alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop	0.55	41.0	3.43e-01	78.5%	95.5%
3919797	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.55	42.0	3.02e-01	89.2%	58.2%
3940257	108.1.1.25 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_4	0.51	42.0	3.90e-01	100.0%	97.8%