←Back to structures

NC_041925.1__YP_009600669.1__QIH99_gp87__00087

Bact-Vir

NC_041925.1__YP_009600669.1__QIH99_gp87__00087

Identity

Accession:
NC_041925 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gorganvirus› Proteus_phage_VB_PmiS-Isfahan

TaxID: 1969841

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-64
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4eeiA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.69 43.0 4.06e-01 100.0% 52.6%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.06e-01 93.8% 68.5%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.65 50.0 4.11e-01 84.4% 45.4%
2h0uA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.65 48.0 3.46e-01 81.2% 37.2%
1b89A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 50.0 3.21e-01 100.0% 17.6%
2dbaA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.63 43.0 3.55e-01 98.4% 39.0%
3dxqB02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.62 53.0 3.77e-01 100.0% 42.2%
3zwcA03 1.10.1040.50 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › 0.62 52.0 3.61e-01 98.4% 37.4%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 43.0 3.28e-01 76.6% 34.3%
6a7hA01 1.20.140.180 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.56 45.0 3.58e-01 96.9% 43.2%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.54 44.0 3.75e-01 90.6% 79.2%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.54 46.0 4.20e-01 100.0% 73.0%
6pw7A01 1.10.238.180 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.53 39.0 3.72e-01 84.4% 66.7%
5e97A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 43.0 3.06e-01 100.0% 56.0%
2hxoA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 37.0 3.02e-01 81.2% 52.1%
4bvxA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.50 42.0 3.69e-01 100.0% 85.7%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3910504 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.90 64.0 7.20e-01 84.4% 96.0%
5083383 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 67.0 6.89e-01 82.8% 93.3%
5066355 101.1.2.181 ↗ alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.82 65.0 5.75e-01 84.4% 61.1%
3198858 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 60.0 5.86e-01 85.9% 72.9%
3933926 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 60.0 5.98e-01 85.9% 78.5%
4014101 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 62.0 5.66e-01 90.6% 63.5%
3958338 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.79 52.0 5.87e-01 70.3% 95.6%
3932960 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 56.0 5.25e-01 81.2% 61.3%
3961039 101.1.3.13 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.77 52.0 5.89e-01 76.6% 100.0%
4994794 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 66.0 6.24e-01 93.8% 89.3%
5011499 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 67.0 6.74e-01 96.9% 95.4%
3366917 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.76 54.0 5.77e-01 76.6% 90.9%
4952808 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 56.0 5.94e-01 90.6% 92.7%
5008720 101.1.1.548 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_32 0.75 56.0 5.61e-01 90.6% 78.5%
5003693 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 56.0 5.60e-01 90.6% 78.5%
5046644 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.75 65.0 4.40e-01 93.8% 28.4%
5049604 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 53.0 5.69e-01 76.6% 87.3%
4959187 101.1.2.489 ↗ alpha arrays › HTH › HTH › winged helix domain › Transposase_mut 0.75 53.0 5.81e-01 76.6% 94.0%
3935045 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 58.0 5.69e-01 84.4% 85.7%
5070167 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 53.0 5.68e-01 100.0% 89.1%
4026717 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 65.0 6.31e-01 98.4% 87.1%
3334149 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 54.0 5.73e-01 78.1% 92.7%
5053142 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.74 66.0 5.29e-01 98.4% 52.5%
5021354 101.1.2.619 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_33 0.74 56.0 5.64e-01 92.2% 81.5%
3814136 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 5.47e-01 76.6% 90.9%
3962597 101.1.3.13 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut 0.72 51.0 5.14e-01 76.6% 73.8%
5049118 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 52.0 5.17e-01 76.6% 75.4%
3957316 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.72 51.0 5.12e-01 76.6% 73.8%
3428283 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 5.28e-01 76.6% 83.3%
4953119 101.1.2.805 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26350 0.71 57.0 4.15e-01 89.1% 38.9%
4929815 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 50.0 5.02e-01 76.6% 73.8%
3597198 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 57.0 5.06e-01 90.6% 77.9%
3311830 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.69 48.0 3.79e-01 73.4% 84.4%
3709551 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.68 49.0 5.10e-01 76.6% 81.7%
4274627 101.1.1.266 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut 0.68 48.0 5.00e-01 76.6% 80.0%
3330042 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 5.38e-01 89.1% 87.7%
3601831 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 55.0 5.30e-01 93.8% 92.0%
3386043 610.4.1.1 ↗ alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.63 47.0 3.67e-01 81.2% 46.2%
3334473 109.4.1.1274 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.63 52.0 3.14e-01 100.0% 13.1%
4945073 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.62 46.0 4.19e-01 81.2% 66.7%
4946450 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.62 48.0 4.32e-01 84.4% 70.5%
5005242 2.21.1.3 ↗ beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.62 44.0 3.21e-01 78.1% 32.8%
3507 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.61 52.0 4.64e-01 98.4% 89.5%
3804773 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 50.0 3.96e-01 100.0% 41.3%
3665471 109.4.1.1271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_24 0.61 50.0 3.42e-01 100.0% 23.8%
3469073 109.4.1.1282 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, TPR_24 0.56 47.0 3.22e-01 100.0% 35.3%
3805784 109.4.1.3484 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, E_motif 0.55 42.0 3.29e-01 100.0% 34.7%
3926252 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 42.0 3.22e-01 92.2% 51.5%
3223925 109.4.1.5 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 0.53 46.0 3.46e-01 100.0% 50.3%
5044421 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.51 36.0 3.47e-01 81.2% 85.0%