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NC_041929.1__YP_009601137.1__FDH46_gp012__00012

Bact-Vir

NC_041929.1__YP_009601137.1__FDH46_gp012__00012

Identity

Accession:
NC_041929 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Emdodecavirus› Sinorhizobium_phage_phiM7

TaxID: 1647403

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-68
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.78 62.0 6.60e-01 100.0% 96.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 63.0 6.43e-01 100.0% 91.7%
1ug1A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 64.0 5.55e-01 100.0% 62.0%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 65.0 6.46e-01 100.0% 90.6%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 61.0 5.85e-01 100.0% 78.6%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 62.0 5.30e-01 100.0% 60.2%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 61.0 6.32e-01 100.0% 96.6%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 47.0 5.41e-01 75.8% 93.2%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 60.0 5.88e-01 100.0% 83.3%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 61.0 5.95e-01 100.0% 85.1%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 60.0 6.07e-01 100.0% 91.8%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 64.0 6.22e-01 100.0% 89.6%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 62.0 6.16e-01 100.0% 90.6%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 63.0 6.27e-01 100.0% 95.4%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.84e-01 100.0% 89.4%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 61.0 5.99e-01 100.0% 97.0%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 59.0 5.73e-01 100.0% 86.8%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 58.0 5.92e-01 98.4% 98.3%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.40e-01 100.0% 77.9%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.65 47.0 4.91e-01 100.0% 82.8%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.54e-01 100.0% 73.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.48e-01 100.0% 80.4%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.62 56.0 5.29e-01 100.0% 91.8%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.63e-01 100.0% 82.3%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 44.0 3.87e-01 93.5% 94.2%
1wmzA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.53 37.0 2.96e-01 75.8% 100.0%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.49e-01 95.2% 85.5%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.50e-01 96.8% 78.1%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3549369 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 66.0 6.77e-01 98.4% 93.3%
3509345 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 66.0 5.43e-01 98.4% 54.3%
3797477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 68.0 6.71e-01 100.0% 92.3%
5000308 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 53.0 5.82e-01 100.0% 91.8%
3234274 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.75 62.0 5.97e-01 100.0% 78.6%
3793311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 64.0 6.49e-01 100.0% 95.0%
3022801 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.75 64.0 5.68e-01 100.0% 66.7%
3255902 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 54.0 4.92e-01 100.0% 58.7%
3557677 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 67.0 6.42e-01 100.0% 85.7%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 62.0 6.13e-01 100.0% 86.2%
3234923 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 63.0 6.34e-01 100.0% 92.1%
3908789 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.73 67.0 4.24e-01 100.0% 23.5%
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 61.0 5.89e-01 100.0% 80.0%
3782325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 60.0 6.04e-01 100.0% 87.3%
3581631 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 62.0 6.13e-01 100.0% 89.2%
3964846 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.71 46.0 4.13e-01 100.0% 48.2%
3500084 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 65.0 6.26e-01 100.0% 88.6%
3570230 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 62.0 5.47e-01 100.0% 66.7%
3474075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.83e-01 100.0% 79.7%
4093354 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 65.0 6.21e-01 100.0% 87.1%
3479042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 62.0 5.94e-01 100.0% 82.9%
3583296 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.71 63.0 6.09e-01 100.0% 85.7%
3514345 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 63.0 6.28e-01 100.0% 93.8%
3482680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 61.0 6.06e-01 100.0% 89.2%
3991896 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 63.0 5.38e-01 100.0% 63.2%
3520216 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 62.0 6.01e-01 100.0% 87.0%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 64.0 6.15e-01 100.0% 94.3%
3470815 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 61.0 5.90e-01 100.0% 84.3%
3503332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 63.0 6.19e-01 98.4% 96.9%
4000858 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 62.0 5.91e-01 100.0% 85.7%
3626068 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 6.12e-01 96.8% 96.7%
3218217 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.68 59.0 5.99e-01 98.4% 96.7%
3475429 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 62.0 5.93e-01 100.0% 91.4%
3594811 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 62.0 6.14e-01 100.0% 96.9%
3937006 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 62.0 5.70e-01 100.0% 85.9%
3933539 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.12e-01 100.0% 80.0%
3232165 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 59.0 5.22e-01 100.0% 97.8%
1824182 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 58.0 5.40e-01 100.0% 77.9%
3370389 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.34e-01 100.0% 86.2%
3767452 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 55.0 4.60e-01 96.8% 83.6%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 49.0 4.97e-01 100.0% 85.0%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.83e-01 100.0% 85.0%
3251420 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 54.0 4.78e-01 100.0% 67.8%
4251669 4.1.1.76 ↗ beta barrels › SH3 › SH3 › SH3 › NdhO 0.61 54.0 5.19e-01 100.0% 88.6%
4380345 4.1.1.257 ↗ beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.60 44.0 4.01e-01 100.0% 57.6%
3253768 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.59 50.0 4.81e-01 100.0% 81.4%
3659671 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.57 47.0 4.52e-01 100.0% 80.0%
3810562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.51e-01 100.0% 76.0%
3640516 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.55 46.0 3.91e-01 100.0% 57.0%
3640801 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.54 45.0 4.15e-01 100.0% 71.2%
3937776 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.52 47.0 4.44e-01 100.0% 84.9%