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NC_041929.1__YP_009601138.1__FDH46_gp013__00013
Bact-VirNC_041929.1__YP_009601138.1__FDH46_gp013__00013
Identity
- Accession:
- NC_041929 ↗
- Kingdom:
- phage
Quality
92.2
mean pLDDT
Taxonomy
TaxID: 1647403
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-60
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.69 | 48.0 | 4.14e-01 | 100.0% | 46.3% |
| 5xbfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 49.0 | 4.33e-01 | 100.0% | 52.9% |
| 4dxaB01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 50.0 | 4.38e-01 | 100.0% | 51.5% |
| 2uwqA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.67 | 46.0 | 4.10e-01 | 98.3% | 50.0% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.65 | 50.0 | 5.38e-01 | 94.9% | 100.0% |
| 1es6A02 | 2.60.510.10 | Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein | 0.65 | 54.0 | 4.71e-01 | 100.0% | 98.0% |
| 3lqmA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 45.0 | 4.03e-01 | 100.0% | 51.1% |
| 2pk0A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.63 | 52.0 | 3.54e-01 | 96.6% | 33.2% |
| 3jrqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 51.0 | 3.39e-01 | 100.0% | 30.6% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 48.0 | 4.13e-01 | 100.0% | 55.3% |
| 1txoB00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 49.0 | 3.42e-01 | 100.0% | 87.3% |
| 2jfrA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 49.0 | 3.43e-01 | 100.0% | 86.8% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 46.0 | 4.35e-01 | 96.6% | 69.7% |
| 2j82A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.59 | 48.0 | 3.40e-01 | 100.0% | 87.3% |
| 6jkvA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.59 | 47.0 | 3.30e-01 | 96.6% | 33.0% |
| 3pvlA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 48.0 | 4.09e-01 | 100.0% | 56.2% |
| 3demA03 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.57 | 36.0 | 3.01e-01 | 96.6% | 34.2% |
| 1pzxA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.56 | 33.0 | 3.98e-01 | 86.4% | 100.0% |
| 3wo4C03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 46.0 | 3.82e-01 | 100.0% | 51.4% |
| 1w99A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 46.0 | 3.32e-01 | 100.0% | 53.9% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.54 | 39.0 | 3.24e-01 | 94.9% | 40.5% |
| 4jxuA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.54 | 42.0 | 3.38e-01 | 89.8% | 90.7% |
| 2q0oA01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.54 | 36.0 | 2.77e-01 | 72.9% | 78.6% |
| 3zn6A01 | 2.60.120.1170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 46.0 | 3.51e-01 | 100.0% | 41.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 44.0 | 3.91e-01 | 98.3% | 92.4% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 44.0 | 3.77e-01 | 100.0% | 58.7% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.52 | 42.0 | 3.72e-01 | 93.2% | 93.6% |
| 2yjlA00 | 2.60.40.2990 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 43.0 | 3.65e-01 | 100.0% | 53.7% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 44.0 | 4.04e-01 | 100.0% | 85.5% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.52 | 41.0 | 3.51e-01 | 94.9% | 83.5% |
| 4ca9A00 | 2.60.120.340 | Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain | 0.51 | 36.0 | 3.14e-01 | 100.0% | 45.9% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.51 | 36.0 | 2.80e-01 | 100.0% | 30.4% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3407846 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.69 | 54.0 | 4.58e-01 | 100.0% | 51.0% |
| 3401013 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.68 | 54.0 | 4.53e-01 | 100.0% | 50.5% |
| 3560843 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.67 | 53.0 | 4.45e-01 | 100.0% | 48.2% |
| 3916476 | 221.1.1.73 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA | 0.67 | 47.0 | 4.23e-01 | 100.0% | 51.8% |
| 150016 | 221.1.1.113 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 | 0.67 | 50.0 | 4.39e-01 | 100.0% | 52.1% |
| 3513575 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.66 | 52.0 | 4.28e-01 | 100.0% | 46.1% |
| 3931970 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 50.0 | 4.22e-01 | 100.0% | 48.2% |
| 3512773 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.64 | 47.0 | 3.89e-01 | 81.4% | 55.7% |
| 5048876 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.64 | 46.0 | 4.56e-01 | 100.0% | 72.3% |
| 3624465 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 50.0 | 4.32e-01 | 100.0% | 53.0% |
| 3242452 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.63 | 48.0 | 4.18e-01 | 100.0% | 51.0% |
| 4257783 | 210.2.1.3 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 | 0.63 | 52.0 | 3.52e-01 | 96.6% | 33.2% |
| 3715519 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.63 | 44.0 | 3.04e-01 | 74.6% | 22.9% |
| 3877524 | 11.1.1.21 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tissue_fac | 0.63 | 47.0 | 3.98e-01 | 100.0% | 48.0% |
| 4944314 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 43.0 | 3.45e-01 | 74.6% | 37.6% |
| 3775415 | 11.1.1.21 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Tissue_fac | 0.62 | 44.0 | 3.69e-01 | 100.0% | 41.8% |
| None | — | 0.62 | 51.0 | 3.44e-01 | 96.6% | 33.2% | |
| 3705025 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.60 | 46.0 | 3.67e-01 | 96.6% | 38.5% |
| 3997516 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.60 | 49.0 | 4.01e-01 | 100.0% | 47.8% |
| 4121299 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.60 | 49.0 | 3.38e-01 | 98.3% | 25.8% |
| 3968768 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.59 | 49.0 | 4.65e-01 | 100.0% | 98.7% |
| 4946800 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.59 | 41.0 | 3.19e-01 | 76.3% | 40.6% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.58 | 41.0 | 4.32e-01 | 100.0% | 94.0% |
| 5062029 | 210.2.1.3 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 | 0.58 | 47.0 | 3.19e-01 | 98.3% | 34.2% |
| 3607139 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.57 | 43.0 | 2.89e-01 | 100.0% | 19.6% |
| 3848577 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.56 | 47.0 | 2.99e-01 | 100.0% | 23.6% |
| 4458441 | 2010.1.1.1 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV | 0.56 | 40.0 | 3.03e-01 | 100.0% | 29.7% |
| 3385583 | 288.1.1.1 ↗ | a+b four layers › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases › Cu-oxidase_4 | 0.55 | 46.0 | 3.22e-01 | 100.0% | 59.5% |
| 3213999 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.55 | 37.0 | 2.33e-01 | 72.9% | 38.5% |
| 4599214 | 221.1.1.73 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA | 0.55 | 45.0 | 3.88e-01 | 100.0% | 86.7% |
| 3876105 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 43.0 | 3.85e-01 | 98.3% | 86.3% |
| 3505476 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.53 | 43.0 | 3.00e-01 | 100.0% | 34.4% |
| 3327146 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 43.0 | 2.53e-01 | 94.9% | 13.7% |
| 4973639 | 210.2.1.3 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 | 0.52 | 43.0 | 3.17e-01 | 96.6% | 33.9% |
| 3392309 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.51 | 39.0 | 3.41e-01 | 100.0% | 53.0% |