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NC_041929.1__YP_009601191.1__FDH46_gp066__00066

Bact-Vir

NC_041929.1__YP_009601191.1__FDH46_gp066__00066

Identity

Accession:
NC_041929 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-59
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c9wA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.73 64.0 5.08e-01 100.0% 61.1%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 47.0 3.84e-01 72.7% 41.1%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 51.0 4.79e-01 80.0% 66.7%
3noyB02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.65 54.0 4.67e-01 100.0% 96.8%
3k6qA02 3.30.160.620 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 46.0 4.00e-01 80.0% 49.4%
1xd3C00 3.40.532.10 Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase 0.62 51.0 3.48e-01 98.2% 90.7%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.62 47.0 3.31e-01 87.3% 63.3%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 47.0 2.94e-01 85.5% 33.9%
5gu7C01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 51.0 3.93e-01 92.7% 90.2%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 49.0 3.54e-01 100.0% 39.9%
2xvlA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.60 47.0 3.19e-01 90.9% 41.0%
1wguA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.62e-01 83.6% 82.6%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.59 40.0 3.50e-01 72.7% 68.2%
3u9sE04 3.30.700.40 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.58 40.0 3.20e-01 74.5% 33.6%
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 45.0 4.29e-01 89.1% 85.5%
4l1mB00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.57 47.0 2.92e-01 94.5% 38.1%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.57 40.0 3.40e-01 76.4% 64.4%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 39.0 3.92e-01 72.7% 86.2%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.56 39.0 3.57e-01 72.7% 80.0%
1iv8A02 3.30.1590.10 Alpha Beta › 2-Layer Sandwich › Maltooligosyl trehalose synthase, domain 2 › Maltooligosyl trehalose synthase, domain 2 0.56 44.0 3.48e-01 98.2% 40.7%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.82e-01 85.5% 78.8%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.55 44.0 3.20e-01 94.5% 68.8%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 45.0 3.25e-01 96.4% 39.0%
1o70A02 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.54 44.0 3.35e-01 98.2% 46.2%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 43.0 3.85e-01 94.5% 74.4%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.54 43.0 3.58e-01 92.7% 93.5%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.54 41.0 3.78e-01 87.3% 92.1%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.54 38.0 3.25e-01 89.1% 45.7%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.53 36.0 2.86e-01 72.7% 33.1%
1yqeA01 3.40.630.50 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › AF0625-like 0.53 41.0 3.09e-01 98.2% 89.2%
5mmiG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 44.0 3.90e-01 98.2% 88.1%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.53 43.0 3.12e-01 98.2% 89.8%
3vp7A00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.52 45.0 3.26e-01 100.0% 98.8%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 39.0 3.52e-01 85.5% 76.8%
1x9yA01 3.10.500.10 Alpha Beta › Roll › prostaphopain b, domain 1 › Staphopain proregion domain 0.52 42.0 3.16e-01 100.0% 71.8%
1b12A02 2.170.230.10 Mainly Beta › Beta Complex › Signal Peptidase I; Chain: A, domain 2 › 0.52 37.0 3.47e-01 80.0% 74.3%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.52 39.0 3.87e-01 92.7% 95.3%
2a4vA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.29e-01 100.0% 79.1%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 34.0 3.27e-01 70.9% 65.7%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 32.0 2.74e-01 76.4% 33.3%
2o30A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.23e-01 76.4% 51.2%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.51 39.0 3.46e-01 85.5% 79.3%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.50 40.0 3.26e-01 92.7% 46.2%
4khbD02 2.30.29.220 Mainly Beta › Roll › PH-domain like › Structure-specific recognition protein (SSRP1) 0.50 38.0 3.41e-01 85.5% 76.5%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3887656 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.70 60.0 4.66e-01 100.0% 66.2%
4443103 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.69 59.0 4.78e-01 98.2% 82.7%
3525333 5.1.4.416 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › HPS3_N, HPS3_C 0.67 54.0 3.42e-01 90.9% 30.3%
3229102 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.67 57.0 3.76e-01 100.0% 22.0%
3215907 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 56.0 3.66e-01 100.0% 25.2%
5002867 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 46.0 3.95e-01 72.7% 100.0%
4056475 296.1.1.3 a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.67 57.0 4.72e-01 100.0% 87.4%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 55.0 3.62e-01 100.0% 21.2%
5081646 7528.1.1.0 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.65 53.0 4.31e-01 90.9% 86.7%
4208229 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.65 42.0 4.35e-01 74.5% 72.0%
5045767 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.65 45.0 3.88e-01 74.5% 95.6%
3247669 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 52.0 3.48e-01 100.0% 21.6%
4940356 219.1.1.97 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase 0.63 51.0 3.56e-01 90.9% 27.9%
3232437 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 53.0 4.37e-01 100.0% 53.6%
3212555 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.63 52.0 4.12e-01 100.0% 42.3%
3618540 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.63 46.0 4.24e-01 81.8% 70.7%
3235968 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.62 52.0 3.46e-01 92.7% 60.0%
5015133 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.62 44.0 4.30e-01 81.8% 70.0%
3937216 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.62 41.0 3.14e-01 72.7% 29.2%
3967552 375.1.1.71 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2387 0.61 42.0 4.53e-01 72.7% 95.6%
4992470 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.61 40.0 3.88e-01 70.9% 61.7%
3648024 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.61 41.0 3.13e-01 72.7% 30.4%
4989777 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 49.0 3.02e-01 90.9% 37.8%
1124186 3794.1.1.2 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.60 41.0 3.33e-01 74.5% 35.6%
3602759 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 40.0 3.99e-01 72.7% 68.3%
4969162 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.58 42.0 4.14e-01 81.8% 71.7%
3966450 3794.1.1.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.58 40.0 3.27e-01 74.5% 36.5%
5058682 2004.1.1.162 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.58 41.0 2.78e-01 76.4% 22.3%
4971298 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 41.0 3.79e-01 76.4% 61.3%
3713023 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 42.0 3.13e-01 81.8% 46.9%
3230955 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 46.0 3.05e-01 92.7% 26.3%
4989457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 43.0 4.46e-01 81.8% 96.0%
3793874 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 40.0 3.17e-01 74.5% 34.2%
4959806 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.57 48.0 2.99e-01 94.5% 93.8%
4989504 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.57 50.0 3.05e-01 100.0% 77.9%
5047657 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.57e-01 94.5% 96.4%
4959886 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.56 45.0 4.55e-01 100.0% 90.9%
4944397 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 44.0 4.58e-01 100.0% 100.0%
3233353 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.55 45.0 3.53e-01 100.0% 55.6%
3209881 109.4.1.207 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 0.54 39.0 2.27e-01 85.5% 7.5%
3629722 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 38.0 2.89e-01 74.5% 29.3%
5051523 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.54 43.0 3.49e-01 94.5% 79.2%
1921564 101.1.2.237 alpha arrays › HTH › HTH › winged helix domain › ThcOx 0.54 39.0 3.21e-01 81.8% 70.4%
5031337 375.8.1.1 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.53 37.0 4.24e-01 80.0% 100.0%
3785779 604.3.1.11 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › DUF155 0.53 45.0 3.00e-01 100.0% 32.8%
4434185 3804.1.1.1 alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease 0.52 39.0 2.89e-01 100.0% 28.5%
3284109 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.52 39.0 2.72e-01 83.6% 27.5%
3388895 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.52 38.0 3.27e-01 87.3% 53.6%
2167707 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.52 38.0 2.78e-01 83.6% 35.4%
4127133 3794.1.1.3 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › ACCA_BT 0.52 42.0 3.29e-01 100.0% 53.6%
3322461 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.52 38.0 3.78e-01 81.8% 95.0%
4956337 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.51 39.0 3.16e-01 89.1% 67.2%
3595832 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.51 36.0 3.65e-01 81.8% 74.5%
5014250 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 3.88e-01 100.0% 85.0%