NC_041929.1__YP_009601235.1__FDH46_gp110__00110

Bact-Vir

Identity

84.3 mean pLDDT

Heunggongvirae› Uroviricota› Caudoviricetes› Emdodecavirus› Sinorhizobium_phage_phiM7

TaxID: 1647403

View cluster (6 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-43_105-151

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ce7B00	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.59	47.0	3.17e-01	85.6%	74.1%
1q6aA00	1.10.1240.30	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain	0.59	52.0	4.91e-01	100.0%	83.2%
1sxjA03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.53	37.0	3.46e-01	74.4%	96.6%
2dlaA01	1.20.930.50	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A ›	0.52	39.0	3.27e-01	81.1%	52.5%
4fcyB02	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.52	34.0	3.91e-01	90.0%	95.4%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3347129	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	38.0	4.33e-01	87.8%	98.5%

D2 medium residues 44-104_152-167

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wfxA02	3.20.170.30	Alpha Beta › Alpha-Beta Barrel › ADP-ribosylation fold ›	0.61	53.0	5.11e-01	98.7%	98.9%
1svdM00	3.30.190.10	Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit	0.56	46.0	4.19e-01	100.0%	65.7%
4x9cD00	2.30.30.100	Mainly Beta › Roll › SH3 type barrels. ›	0.55	29.0	3.21e-01	98.7%	65.0%
3l2pA02	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.54	37.0	3.83e-01	98.7%	77.5%
3mr7A00	3.30.70.1230	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain	0.54	47.0	3.70e-01	100.0%	96.0%
4d05A01	3.30.1490.70	Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 ›	0.53	39.0	3.93e-01	98.7%	78.9%
1burS00	3.30.190.10	Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit	0.52	44.0	3.92e-01	100.0%	67.5%
7qh7701	3.30.980.10	Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2	0.52	40.0	3.11e-01	87.0%	86.7%
4h3sA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.50	42.0	2.84e-01	98.7%	22.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3106804	237.1.1.4 ↗	a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA	0.62	55.0	4.99e-01	100.0%	87.4%
4622968	237.1.1.4 ↗	a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA	0.59	50.0	4.83e-01	97.4%	96.7%
4125268	237.1.1.4 ↗	a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA	0.59	51.0	4.88e-01	98.7%	97.8%
4303698	237.1.1.4 ↗	a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA	0.59	50.0	4.79e-01	98.7%	94.7%
4008473	237.1.1.4 ↗	a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › PTS_2-RNA	0.59	50.0	4.66e-01	97.4%	87.9%
5059796	4326.1.1.0 ↗	a+b two layers › ERH-like › ERH-like › ERH-like	0.53	40.0	4.20e-01	100.0%	88.4%
4497845	309.1.2.1 ↗	a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA_SAD	0.53	38.0	3.03e-01	79.2%	96.6%
4277361	302.2.1.1 ↗	a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small	0.51	44.0	3.68e-01	100.0%	61.5%