←Back to structures

NC_041929.1__YP_009601241.1__FDH46_gp116__00116

Bact-Vir

NC_041929.1__YP_009601241.1__FDH46_gp116__00116

Identity

Accession:
NC_041929 ↗
Kingdom:
phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Emdodecavirus› Sinorhizobium_phage_phiM7

TaxID: 1647403

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-83
PDB
Domain cluster: rep: MN988526.1__QIG72951.1__EVB98_029__00029__D185-248
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6g6qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 45.0 3.57e-01 73.2% 47.2%
3aihB01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.62 43.0 3.80e-01 73.2% 92.5%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 43.0 4.25e-01 71.8% 87.8%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.62 47.0 3.90e-01 80.3% 74.6%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 47.0 3.08e-01 87.3% 60.4%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.60 46.0 3.18e-01 84.5% 42.4%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.15e-01 91.5% 34.6%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 46.0 3.06e-01 88.7% 52.7%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 3.03e-01 91.5% 58.0%
8dc1A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 45.0 3.15e-01 90.1% 95.7%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 44.0 2.90e-01 87.3% 67.0%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.03e-01 97.2% 30.7%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 44.0 3.01e-01 93.0% 79.2%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 37.0 3.33e-01 90.1% 49.5%
2o3iA02 2.40.390.10 Mainly Beta › Beta Barrel › CV3147-like › CV3147-like 0.55 44.0 3.54e-01 84.5% 60.3%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 4.12e-01 87.3% 96.5%
1v95A01 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.55 47.0 4.06e-01 100.0% 86.2%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 3.00e-01 95.8% 43.1%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 45.0 3.32e-01 95.8% 70.5%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 3.07e-01 100.0% 43.0%
3ei3B02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.07e-01 100.0% 31.6%
4pswB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 43.0 2.77e-01 91.5% 38.3%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 43.0 4.29e-01 94.4% 85.3%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.52 42.0 3.60e-01 90.1% 56.2%
2g7jA00 3.90.1150.40 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 0.52 45.0 3.92e-01 98.6% 83.9%
5esyA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 36.0 2.66e-01 73.2% 70.6%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 38.0 3.27e-01 93.0% 45.2%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 43.0 2.96e-01 100.0% 80.1%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3224940 5.1.5.105 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_IFT140_1st 0.65 48.0 3.02e-01 78.9% 31.4%
3582807 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 45.0 2.80e-01 74.6% 43.5%
3580751 5.1.3.218 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40, WD40_CDC20-Fz 0.61 47.0 3.27e-01 83.1% 51.7%
3722077 5.1.4.499 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_NOL10_N, WD40_CDC20-Fz 0.61 54.0 3.51e-01 100.0% 37.5%
3665000 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.60 49.0 3.67e-01 88.7% 75.4%
3582180 5.1.3.221 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_WDR36-Utp21_1st 0.60 42.0 3.16e-01 73.2% 37.6%
4031984 3894.1.1.1 ↗ beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.59 42.0 3.53e-01 78.9% 43.2%
3788085 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 46.0 2.94e-01 85.9% 54.8%
3416381 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.58 49.0 3.11e-01 94.4% 50.1%
3939798 5.1.4.259 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_CDC20-Fz 0.58 45.0 2.83e-01 84.5% 39.3%
4957034 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 49.0 3.13e-01 94.4% 52.1%
4021342 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 3.23e-01 100.0% 49.2%
3999013 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 49.0 3.11e-01 100.0% 50.5%
3936024 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 46.0 3.07e-01 93.0% 50.6%
3996851 5.1.4.321 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.56 49.0 3.66e-01 97.2% 57.8%
3502305 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 47.0 3.27e-01 93.0% 71.7%
3803844 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 43.0 2.80e-01 87.3% 42.6%
3615236 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 50.0 3.08e-01 100.0% 28.2%
3630390 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.56 49.0 3.14e-01 98.6% 46.1%
3934570 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 44.0 2.85e-01 90.1% 62.9%
3316791 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 48.0 3.12e-01 98.6% 60.3%
3172580 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.94e-01 97.2% 37.5%
3408075 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 3.08e-01 95.8% 47.9%
3876642 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.80e-01 90.1% 68.2%
5059545 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 45.0 2.97e-01 91.5% 42.2%
4002646 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 3.17e-01 94.4% 40.0%
3927439 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.54 48.0 3.63e-01 100.0% 80.6%
3832495 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 44.0 2.83e-01 90.1% 36.1%
2413866 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 3.01e-01 95.8% 45.6%
4888761 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 46.0 3.42e-01 97.2% 56.3%
4505483 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 43.0 2.71e-01 94.4% 37.8%
4321106 5.1.4.307 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.53 47.0 2.97e-01 100.0% 24.9%
4029623 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.69e-01 94.4% 13.8%
3740947 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.53 46.0 2.95e-01 100.0% 33.4%
3272607 5.1.4.278 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, BING4CT 0.53 45.0 2.80e-01 100.0% 66.9%
2985887 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.52 42.0 2.80e-01 94.4% 57.9%
3922884 5.1.4.271 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.52 42.0 2.78e-01 95.8% 49.2%
3173290 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.52 44.0 2.83e-01 98.6% 32.1%
None — 0.52 44.0 2.83e-01 98.6% 23.0%
2989643 5.1.3.154 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.52 41.0 2.76e-01 94.4% 57.5%
3826594 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.51 42.0 2.88e-01 95.8% 25.9%
4355548 558.1.1.26 ↗ alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › WD40 0.51 42.0 2.67e-01 100.0% 38.0%
3623326 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 42.0 2.84e-01 98.6% 42.3%
3742540 5.1.5.88 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nucleoporin_N 0.50 40.0 2.54e-01 93.0% 60.2%
3575356 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 2.86e-01 100.0% 31.6%
3672189 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 42.0 2.62e-01 98.6% 58.0%