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NC_041929.1__YP_009601268.1__FDH46_gp335__00143
Bact-VirNC_041929.1__YP_009601268.1__FDH46_gp335__00143
Identity
- Accession:
- NC_041929 ↗
- Kingdom:
- phage
Quality
71.4
mean pLDDT
Taxonomy
TaxID: 1647403
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-89
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dnxA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.88 | 80.0 | 5.77e-01 | 100.0% | 41.5% |
| 3g67A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.87 | 79.0 | 5.07e-01 | 100.0% | 28.6% |
| 2ch7A00 | 1.10.287.950 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein | 0.87 | 74.0 | 4.46e-01 | 100.0% | 15.2% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.86 | 69.0 | 4.83e-01 | 100.0% | 29.3% |
| 3fd9A03 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.83 | 73.0 | 6.43e-01 | 98.0% | 68.5% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.83 | 74.0 | 5.66e-01 | 100.0% | 87.5% |
| 1w99A01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.83 | 74.0 | 5.03e-01 | 100.0% | 28.9% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.82 | 65.0 | 5.21e-01 | 88.0% | 45.3% |
| 1t7sA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.81 | 71.0 | 5.24e-01 | 100.0% | 38.8% |
| 1zbtA01 | 6.10.140.1950 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 68.0 | 5.74e-01 | 100.0% | 59.0% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 65.0 | 5.23e-01 | 100.0% | 52.9% |
| 3p01A01 | 6.10.140.590 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 66.0 | 5.62e-01 | 100.0% | 73.5% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.75 | 66.0 | 5.16e-01 | 100.0% | 45.5% |
| 1ikpA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.75 | 48.0 | 3.32e-01 | 86.0% | 20.9% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.75 | 63.0 | 4.85e-01 | 94.0% | 44.1% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.74 | 64.0 | 5.55e-01 | 100.0% | 61.7% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.74 | 61.0 | 5.74e-01 | 96.0% | 75.0% |
| 2ycdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.74 | 60.0 | 4.71e-01 | 96.0% | 52.1% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 60.0 | 5.80e-01 | 94.0% | 84.5% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.73 | 56.0 | 4.70e-01 | 84.0% | 58.8% |
| 4j0eA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.72 | 51.0 | 3.33e-01 | 74.0% | 18.3% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.72 | 60.0 | 4.77e-01 | 96.0% | 88.7% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 61.0 | 4.92e-01 | 98.0% | 92.1% |
| 3vkgA12 | 1.10.287.2610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 60.0 | 4.00e-01 | 100.0% | 77.7% |
| 4m0mA04 | 1.20.1270.440 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.71 | 55.0 | 4.28e-01 | 88.0% | 53.0% |
| 2qyuA02 | 1.25.40.300 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein | 0.71 | 51.0 | 3.41e-01 | 78.0% | 20.0% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.70 | 57.0 | 4.29e-01 | 92.0% | 38.9% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 57.0 | 4.75e-01 | 100.0% | 56.1% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 52.0 | 5.10e-01 | 92.0% | 77.6% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.69 | 57.0 | 5.49e-01 | 98.0% | 84.5% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 52.0 | 4.14e-01 | 88.0% | 40.7% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 55.0 | 5.19e-01 | 96.0% | 75.8% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.65 | 56.0 | 5.13e-01 | 98.0% | 77.6% |
| 3kr9A02 | 1.10.287.1890 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 49.0 | 4.68e-01 | 90.0% | 72.1% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 52.0 | 4.85e-01 | 100.0% | 76.5% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.63 | 49.0 | 4.95e-01 | 88.0% | 89.8% |
| 3nkuA00 | 1.10.357.170 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.63 | 54.0 | 3.73e-01 | 98.0% | 65.9% |
| 2pusA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 49.0 | 4.87e-01 | 98.0% | 86.8% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 49.0 | 3.56e-01 | 86.0% | 32.1% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 40.0 | 4.34e-01 | 74.0% | 85.4% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3570680 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.95 | 88.0 | 5.06e-01 | 100.0% | 12.8% |
| 3869638 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.95 | 88.0 | 5.56e-01 | 100.0% | 23.3% |
| 3946793 | 101.1.1.259 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Terminase_5 | 0.91 | 71.0 | 5.22e-01 | 82.0% | 35.7% |
| 4042958 | 152.1.2.1 ↗ | alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 | 0.90 | 81.0 | 6.46e-01 | 100.0% | 52.6% |
| 3600361 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.90 | 81.0 | 6.47e-01 | 100.0% | 52.6% |
| 3608012 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.90 | 82.0 | 6.75e-01 | 100.0% | 58.8% |
| 3876359 | 4207.1.2.105 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › PF26705 | 0.89 | 79.0 | 5.94e-01 | 98.0% | 42.6% |
| 3607086 | 4992.1.1.0 ↗ | extended segments › RelB-like › RelB-like › RelB-like | 0.89 | 81.0 | 6.86e-01 | 100.0% | 62.5% |
| 3761838 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.89 | 80.0 | 6.04e-01 | 100.0% | 43.5% |
| 3915514 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.89 | 80.0 | 5.87e-01 | 100.0% | 40.0% |
| 3563618 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.89 | 80.0 | 6.09e-01 | 100.0% | 45.5% |
| 3888162 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.88 | 79.0 | 5.89e-01 | 100.0% | 41.7% |
| 3779360 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.88 | 79.0 | 5.43e-01 | 100.0% | 31.2% |
| 3195418 | 192.8.1.376 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › RRP36 | 0.88 | 79.0 | 6.31e-01 | 100.0% | 52.6% |
| 3605559 | 604.9.1.0 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 | 0.87 | 78.0 | 6.01e-01 | 100.0% | 47.7% |
| 3889578 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.87 | 77.0 | 5.72e-01 | 100.0% | 40.0% |
| 3382794 | 304.9.1.7 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS | 0.87 | 78.0 | 4.72e-01 | 100.0% | 16.7% |
| 3531403 | 3914.1.1.0 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain | 0.87 | 72.0 | 7.25e-01 | 88.0% | 88.0% |
| 3224003 | 9001.1.1.3 ↗ | alpha bundles › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMEM120/ELO/TLC › TMPIT | 0.86 | 78.0 | 6.58e-01 | 100.0% | 62.5% |
| 3791248 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.85 | 64.0 | 4.21e-01 | 100.0% | 21.6% |
| 4965518 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.84 | 73.0 | 5.65e-01 | 100.0% | 45.7% |
| 4043617 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.83 | 76.0 | 4.61e-01 | 100.0% | 17.5% |
| 2555592 | 5069.1.1.3 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_I | 0.82 | 71.0 | 5.99e-01 | 98.0% | 61.2% |
| 3305069 | 605.1.1.92 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Myb_CC_LHEQLE | 0.82 | 75.0 | 6.62e-01 | 100.0% | 71.4% |
| 3589236 | 3291.1.1.142 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF7649 | 0.82 | 61.0 | 4.98e-01 | 82.0% | 43.2% |
| 3810882 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.81 | 72.0 | 4.43e-01 | 100.0% | 19.6% |
| 3880637 | 3755.3.1.465 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A | 0.80 | 71.0 | 5.09e-01 | 100.0% | 35.7% |
| 3593736 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.80 | 71.0 | 5.61e-01 | 100.0% | 50.0% |
| 3705324 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.79 | 71.0 | 5.98e-01 | 100.0% | 61.3% |
| 3789322 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.77 | 67.0 | 4.18e-01 | 100.0% | 17.5% |
| 2914508 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.77 | 66.0 | 4.11e-01 | 100.0% | 17.6% |
| 3588414 | 2004.1.1.430 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, ABC_tran_Xtn | 0.76 | 70.0 | 3.92e-01 | 100.0% | 23.2% |
| 3972992 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.76 | 65.0 | 6.00e-01 | 98.0% | 78.5% |
| 3407103 | 3871.1.1.0 ↗ | alpha duplicates or obligate multimers › PHIST › PHIST › PHIST | 0.75 | 65.0 | 4.74e-01 | 100.0% | 35.7% |
| 2663455 | 192.7.1.0 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm | 0.73 | 63.0 | 5.72e-01 | 100.0% | 72.1% |
| 3708789 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.73 | 64.0 | 5.19e-01 | 100.0% | 51.6% |
| 3402099 | 5043.2.1.5 ↗ | extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › ATP_synt_H | 0.73 | 57.0 | 4.98e-01 | 94.0% | 57.3% |
| 4316383 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.71 | 63.0 | 5.07e-01 | 100.0% | 51.6% |
| 4030051 | 2004.1.1.480 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 | 0.71 | 60.0 | 3.52e-01 | 94.0% | 14.4% |
| 4941676 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.67 | 55.0 | 3.92e-01 | 100.0% | 28.6% |
| 3790478 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.66 | 55.0 | 3.48e-01 | 100.0% | 21.7% |
| 4961961 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.62 | 50.0 | 4.59e-01 | 100.0% | 66.7% |