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NC_041929.1__YP_009601313.1__FDH46_gp290__00188
Bact-VirNC_041929.1__YP_009601313.1__FDH46_gp290__00188
Identity
- Accession:
- NC_041929 ↗
- Kingdom:
- phage
Quality
93.7
mean pLDDT
Taxonomy
TaxID: 1647403
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-166_258-275
Domain cluster:
rep: NC_070967.1__YP_010671382.1__PQC17_gp233__00233__D3-158_252-294
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02739.23 best | 5_3_exonuc_N | 56.5 | 3.90e-15 | 82.4% | 62.2% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zdbA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.85 | 66.0 | 7.06e-01 | 90.1% | 91.1% |
| 1tfrA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.85 | 82.0 | 7.85e-01 | 100.0% | 93.7% |
| 3e3vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 20.0 | 3.60e-01 | 79.7% | 96.2% |
| 1kjnA00 | 3.40.50.10160 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like | 0.57 | 37.0 | 4.03e-01 | 90.1% | 78.3% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 38.0 | 4.04e-01 | 90.1% | 75.9% |
| 2h92A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 38.0 | 3.63e-01 | 71.4% | 97.2% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 24.0 | 3.09e-01 | 86.8% | 73.8% |
| 2ox6D00 | 1.10.3100.10 | Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein | 0.51 | 32.0 | 3.36e-01 | 72.5% | 67.1% |
| 3om0A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 38.0 | 4.05e-01 | 76.4% | 93.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2074443 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.91 | 76.0 | 7.80e-01 | 89.6% | 89.1% |
| 4355422 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.89 | 69.0 | 7.11e-01 | 90.1% | 82.9% |
| 3969358 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.85 | 70.0 | 7.48e-01 | 90.1% | 95.6% |
| 3261281 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.84 | 70.0 | 7.28e-01 | 90.1% | 91.7% |
| 3387660 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.83 | 67.0 | 6.94e-01 | 90.1% | 88.8% |
| 3942272 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.81 | 69.0 | 7.12e-01 | 90.1% | 94.1% |
| 3293941 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.81 | 70.0 | 6.66e-01 | 90.1% | 86.7% |
| 4031817 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.80 | 67.0 | 6.97e-01 | 90.1% | 92.4% |
| 4238071 | 2006.1.4.4 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N | 0.80 | 69.0 | 7.07e-01 | 90.1% | 93.1% |
| 5051400 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.63 | 46.0 | 5.08e-01 | 89.6% | 93.2% |
| 4988271 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.62 | 47.0 | 5.22e-01 | 86.8% | 97.9% |
| 3368127 | 2005.1.1.41 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C | 0.58 | 34.0 | 4.18e-01 | 74.7% | 90.4% |
| 4965650 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.55 | 40.0 | 4.49e-01 | 84.1% | 95.7% |
| 5074975 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.53 | 38.0 | 4.28e-01 | 85.7% | 95.1% |
| 3741475 | 2005.1.1.14 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct | 0.53 | 39.0 | 3.56e-01 | 100.0% | 58.3% |
| 4976214 | 2484.1.1.124 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 | 0.52 | 41.0 | 4.05e-01 | 83.0% | 97.5% |
| 3689548 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.52 | 38.0 | 4.19e-01 | 86.8% | 94.0% |
| 3972419 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.51 | 38.0 | 4.16e-01 | 86.8% | 92.7% |
| 4555376 | 2004.1.1.59 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE | 0.51 | 36.0 | 3.61e-01 | 72.5% | 97.4% |
| 5009778 | 2004.1.1.79 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin | 0.51 | 36.0 | 3.51e-01 | 72.5% | 95.7% |
| 3280795 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.50 | 33.0 | 3.73e-01 | 97.8% | 85.7% |
D2
high
residues 168-234
Domain cluster:
rep: KR560069.1__AKO61708.1__X__00156__D54-116
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h7iA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.86 | 79.0 | 7.54e-01 | 100.0% | 96.1% |
| 5hmlA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.66 | 60.0 | 5.63e-01 | 100.0% | 90.0% |
| 3zdbA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.63 | 54.0 | 5.02e-01 | 100.0% | 79.8% |
| 7jv7B01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 47.0 | 3.72e-01 | 98.5% | 54.1% |
| 2o5rA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.53 | 34.0 | 3.77e-01 | 86.6% | 91.7% |
| 1wh4A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 43.0 | 3.98e-01 | 100.0% | 69.1% |
| 1lp1A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.51 | 34.0 | 3.66e-01 | 92.5% | 87.3% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.51 | 32.0 | 3.58e-01 | 86.6% | 91.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 390596 | 102.1.1.19 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNaseH_C | 0.86 | 79.0 | 6.23e-01 | 100.0% | 56.9% |
| 3942250 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.68 | 62.0 | 4.86e-01 | 100.0% | 65.9% |
| 4995753 | 102.1.1.4 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › 5_3_exonuc | 0.65 | 58.0 | 4.78e-01 | 100.0% | 59.7% |
| 3838579 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.64 | 57.0 | 5.42e-01 | 100.0% | 90.0% |
| 3287413 | 101.1.4.3 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 | 0.63 | 43.0 | 4.06e-01 | 100.0% | 60.0% |
| 3613552 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 48.0 | 3.56e-01 | 100.0% | 33.9% |
| 3593197 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.56 | 46.0 | 4.29e-01 | 100.0% | 72.2% |
| 3286804 | 101.1.9.93 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF5997 | 0.54 | 34.0 | 3.61e-01 | 83.6% | 76.4% |
| 223875 | 6090.1.1.1 ↗ | alpha arrays › N-terminal domain of lytM › N-terminal domain of lytM › N-terminal domain of lytM › LytM_N | 0.51 | 38.0 | 3.54e-01 | 97.0% | 61.8% |